Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27180 380 / 6e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 344 / 3e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 342 / 2e-96 transmembrane receptors;ATP binding (.1.2) AT5G17680 285 / 3e-78 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 272 / 5e-75 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 270 / 2e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 266 / 2e-73 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 266 / 2e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 264 / 7e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 263 / 1e-71 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008526 [exp] 1470 / 0 AT5G36930 361 / 5e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004719 [exp] 1446 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 1390 / 0 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 1366 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 1286 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 1074 / 0 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 981 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 881 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 847 / 0 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021681 [exp] 409 / 2e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 404 / 2e-121 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 392 / 7e-121 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 410 / 2e-120 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 406 / 3e-120 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 402 / 5e-119 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 396 / 2e-118 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 399 / 4e-118 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 395 / 5e-117 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 397 / 1e-116 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10008519 pacid=23177380 polypeptide=Lus10008519 locus=Lus10008519.g ID=Lus10008519.BGIv1.0 annot-version=v1.0 ATGAGTTATTCAAGAGAAGTTGCTACTGCGGTTGCCTTGCTTCTCAACAATTTCTGCTGTGGGAGACGGAATCTCAACAATGACAATGAGGATACCATTC AGCAAACAGATTCAACTTCTCCTGCTGTTGATGAGTCTTTTGTCACGTCCGATTATGCCGACCCCCCTGCTTCATCTCCGTCAGTGAATTCAACATCCGT AGTTGATGCCCTATCGGATTTCACAAATCCCTCTGGTTCGTTTCCCTCGGTGGAGTATGAGGTGTTTTTGAGTTTCAGGGGTCCAGATACTCGATATCAA ATCACCGACTTCCTCTATCGTTTTCTTCGTCGCACAAAGATTCACACGTTTAAAGACGATGATGAGCTTCGCAAGGGAGAAGAGATAAAGTCCAACCTCT TTAGAGCAATCGACCAGTCGAAAATTTATGTTCCGATCATATCAGAGGGTTACGCCGATAGTAGATGGTGTCTTATGGAGCTTGCAGAAATTGTCCGGCA TCAAGAATTGGACACTCGACGGATTATACTTCCTACTTTTTATATGGTAGATCCAAAAGATGTGCGACATCAGACCGGACCTTATCGAAAAGCATTTCAA GAACACGCGACTAAATATGATGAAATGACCATACAGAGGTGGAAAGATGCTCTAAATAAAGTTGGAGCCTTGAAAGGATGGCACGTCAAAAGCAATGACG ACTCTTTGGAAATCCCTCTTCAGCAAAGACATTCTCATGAAGGAATGAGTTATTTAAGAGAAGTTGCTACTGCGGTTGCGTTGCTTCTCAACAATTTTTG CTGTGGGAGACGGAATGAGGATACCATTCAGCAAACAGATTCATCTCCGTCAATGGATTCAACATCTGTAGTTGATGCCATATCGGACTCCACAAATCCC TCTGGTTCATTTCCTTCGGTGGAGTATGAGGTGTTTTTGAGTTTCAGGGGTCCAGATACTCGTTATCAAATTACCGACATCCTCTATCGTTTCCTTTGTC ACACAAAGATTCACACGTTTAAAGACGATGAAGAGCTTCGCAAGGGAGAAGAGATAAAGTCCAACCTCGTTACAGCAATCGACCAGTCAAAAATTTATGT CCCGATCATATCAGGGGGTTACGCCGATAGTAAATGGTGTCTTATGGAGCTTGCAGAAATTGTTCGACATCAAAAGCTGGACACTCGACGAATTATACTT CCTATTTTTTATATGGTGGATCCAAAAGATGTACGACATCAAACTGGACCTTATCGAAAAGCATTTCAAGAACACCAAACTAAATATGATGAAATGACCA TACAGAGCTGGAAAGATGCTCTAAATAAGGTTGGAGCTTTAAAAGGATGGCACGTCAAAAGCAATGACGAGCAGGGAGCTACCGCAGATCAAGTTTATGC AAATATATGGTCGCATATAAGTAAGAAAAATTCTATTTTAGAGACGGATGAATTGGTTGGAATTGGTGATCATATAGAAGCTGTATTAGAAAAATTGAGT CTAGACTCTAAAGGTCTGACAATAGTAGGCCTTTATGGTATGGGTGGAATAGGCAAGACGACCATTGCAAAGGTGGTTTATAACAAGATTTCTTTTAATT TCGATCGTTGTTGTTTTCTTGAGAATATAAGAGAAACACAACATCAAAAGGATGGCGTGGTTATTTTGCAAAAGAAGCTAATATCTGAAGCTTTGAGGAT GGGTTCTATTGGATTTACTAATGATAGTGGCGGAAGGAAGATGATAAAGGAGAGAGTTTCGAAGTTCAAAATTCTTGCCGTTCTCGATGATGTGGATGAG AAGTTTAAATTTGAAGATATATTAGGAAGTCCTACAGATTTCACTTCTGGAAGTAGATTCATCATTACTTCAAGAGATCACAATGTCTTGAGTACTTTGA ATGAAAATAAATGCAAGTTGTATGAAGTTGTATCGATGAGCCAACCACATTCGCTAGAACTCTTTTCCAAGCATGCGTTCAAAAAGAATATGCCTCCATC GGATTATGAGACTCTAGCAAATATGATTGTATCGACTACGGGAGGACTTCCATTGACTCTAAAGGTTATAGGTTCACTTTTGTTCGGACATGAGAGTGAG TTTTGGTATGATAAGTTGGAACAGTTACGTCAAACACTTAACCTTGGTCAGGTTTTCGACAGGCTAAAGATAAGTTACGATACATTGGATCATGAGGCCC AACAAATTTTCTTGGATGTAGCTTGTTTTTTCATCGGAGCAAATAAAGAAGAACCATATTACATGTGGAGCGAATGCAATTTTTATCCTAAAAGTAATAT TATTTTTCTTATTCAAAGATGTATGATACAAGTTGGAGATGATGGGGTGTTTAAAATGCACGACCAACTTAGAGATATGGGTAGAGAAATTGTGAGACGA GAGGATGTGGAGCGGCCGTGGAAGAGAAGTAGGATATGGTCAAGCGAAGAAGGAATTGATCTCTTGTTGAACAAAAAGGGATCAAGTCAAGTAAAAGCAA TTCGCATAGACCCACCCTGGGAGTCAGATGTCAAGTATGAGTTTAAGAGTGAATGTTTTTTGAATTTGTCAGAGTTGAGATATTTTGATGCAGATCCAAC AATATTGCTGACCGGAGATTTCAATAATCTTCTCCCGAATTTGAGGTGGCTTCAATTGCCAGCTTACGCATATGAAGAGGACGGTCCTCTTTTGACCAAT TTTACTATGAAAAATCTGATAATTTTAATCCTTGGGGTAAACAGCGCAATAGAGCTTTTGAAGGTGCACTATTTTCCGCCGTCAGTTGTGGAATCAATTT ATGATAGTCTTTGTTCTTCACGTTTCGGTTGGGGCCTTATGAAGGTTAATTTGGTTGTGGCTGAGAGGCTGAAAGTTGTACGACTTTCTCCAGCAACAGT CTATAGGATCCCCGAAACATTTGGCTGTTGGCGCTTCCCCAAAAGCATTGAGGTATTATCCATGAATTCTATGAGAATTGAAGAACTTGATATTGGGGAG TTAAAGAAGCTAAAGACGTTGGATCTGAGCTACTGTACAATACAAAAGATAAGTGGGGGAACCTTTGGTATGTTGAAGGGACTCATAGAGCTTGAACTCA TCGACTTCAAGTGTACAAATTTGAGAGAGTTAGTTGCTGATGTTGGTCAGCTGTCGTCTCTCAAAGTCTTGAAAACAGAAGGAGCTAAGGAGGTCCAGTT TGAATTTCCATTAGGTTTGAAGGAGTTATCCACGTCATCTCGGACTCCGAATCTTTTAGAGTTGTTGGATTTGGAGGTACTGAAGGTTGATGGTTGCAAG GATGGAATCGACATCCCTCCTGCTAAGAGTACTGAAGATGAAGGTAGCGTGTGGTGGAAGGTATCCAAGTTGAAGTGTTTGGTACTCTTTAACACAAGAA TCAATATCAACGTTGTGGATGCTTCTTCCGGTGGTCACCTCCCTAGTTATTTACTACCAACGTCCCTAACCTATCTCGAAATTAATTCGTGTGAAGAACC AATGTGGCTTCCAGGAATAGAGAACTTGGAGAATTTGACTTGGCTTGAAGTCAACGACATCTCCCAAACTCTTGGAGGTGATTTGGATGGGCTACAAGGG TTGAGATCGTTGGAAACTCTTACTATTTCGGCAGTAAACGGTTTAGTTCGGATCAAAGGGCTTAAGGATCTCTTGTGTTCTTCTACCTGCAACTTGCAGT CATTAGTGATTGAATACTGCCCTGACCTCACTGAGTTACTCCCATGCGAACTCGACGACCAAACAGTAGTAGTCCCCTCTTTGGTAGAACTGACCATTCG GGATTGTCGGTGGCTGGAGGTTGGCCCGGTGATACGATCTCTCCCAAAGTTCCCAATGCTAAATCATTTGACTCTCTCGATGGTAAATATAACTAAGGAG GAGGAGCTGGAGGTGCTTGGATCCCTAGAAGAGTTGGCTAGTTTGGAGTTAAAGTTAGATGATACATCTTCTTCCAGCATAGAGAGGATATCTTTCTTGT CGAAGCTGAAAAAGTTAACTAAACTCACAGTGAAGGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGCAGAGTTGAAATCTTTACAAAGATTGAATCTAGA GGGATGCACGTCGTTGGAGACACTGTGGGCGCCTGGGAATCAGCAACTCGATAAGCTGAAGGAGCTAGACATCCATGGATGCAATAGCTTGAGTGTTGAT CATCTCTCTTCACTCAAGACCAGTTTACGGCCCGATGTAGTGATAAGATGGCCCCATGAAGAAATCTTCTCCAGCTCCGGCTCCAGCGAATTACCGTGCG GGTGGGGGCACCACTGGGTTGCACCGGTTGGATACATAGTCATCACGGTGGATATTAACGGGTCGGGACAGTTTCGACCGGTGCAAGCGGCGATTGACTC GGTGCCGGAGAATAACGACGAGAATGTCCTCATCCAGCTCAGCCCCGGCGTCTACATGTACGTACGCCGTAGAATTTTACATAATTATCTTGTTATTTTT TACGAAGTGTTTTCAAAACCGTATCGGTATAGAGGCCTGACCGGTTAG
AA sequence Show only first row Show all	>Lus10008519 pacid=23177380 polypeptide=Lus10008519 locus=Lus10008519.g ID=Lus10008519.BGIv1.0 annot-version=v1.0 MSYSREVATAVALLLNNFCCGRRNLNNDNEDTIQQTDSTSPAVDESFVTSDYADPPASSPSVNSTSVVDALSDFTNPSGSFPSVEYEVFLSFRGPDTRYQ ITDFLYRFLRRTKIHTFKDDDELRKGEEIKSNLFRAIDQSKIYVPIISEGYADSRWCLMELAEIVRHQELDTRRIILPTFYMVDPKDVRHQTGPYRKAFQ EHATKYDEMTIQRWKDALNKVGALKGWHVKSNDDSLEIPLQQRHSHEGMSYLREVATAVALLLNNFCCGRRNEDTIQQTDSSPSMDSTSVVDAISDSTNP SGSFPSVEYEVFLSFRGPDTRYQITDILYRFLCHTKIHTFKDDEELRKGEEIKSNLVTAIDQSKIYVPIISGGYADSKWCLMELAEIVRHQKLDTRRIIL PIFYMVDPKDVRHQTGPYRKAFQEHQTKYDEMTIQSWKDALNKVGALKGWHVKSNDEQGATADQVYANIWSHISKKNSILETDELVGIGDHIEAVLEKLS LDSKGLTIVGLYGMGGIGKTTIAKVVYNKISFNFDRCCFLENIRETQHQKDGVVILQKKLISEALRMGSIGFTNDSGGRKMIKERVSKFKILAVLDDVDE KFKFEDILGSPTDFTSGSRFIITSRDHNVLSTLNENKCKLYEVVSMSQPHSLELFSKHAFKKNMPPSDYETLANMIVSTTGGLPLTLKVIGSLLFGHESE FWYDKLEQLRQTLNLGQVFDRLKISYDTLDHEAQQIFLDVACFFIGANKEEPYYMWSECNFYPKSNIIFLIQRCMIQVGDDGVFKMHDQLRDMGREIVRR EDVERPWKRSRIWSSEEGIDLLLNKKGSSQVKAIRIDPPWESDVKYEFKSECFLNLSELRYFDADPTILLTGDFNNLLPNLRWLQLPAYAYEEDGPLLTN FTMKNLIILILGVNSAIELLKVHYFPPSVVESIYDSLCSSRFGWGLMKVNLVVAERLKVVRLSPATVYRIPETFGCWRFPKSIEVLSMNSMRIEELDIGE LKKLKTLDLSYCTIQKISGGTFGMLKGLIELELIDFKCTNLRELVADVGQLSSLKVLKTEGAKEVQFEFPLGLKELSTSSRTPNLLELLDLEVLKVDGCK DGIDIPPAKSTEDEGSVWWKVSKLKCLVLFNTRININVVDASSGGHLPSYLLPTSLTYLEINSCEEPMWLPGIENLENLTWLEVNDISQTLGGDLDGLQG LRSLETLTISAVNGLVRIKGLKDLLCSSTCNLQSLVIEYCPDLTELLPCELDDQTVVVPSLVELTIRDCRWLEVGPVIRSLPKFPMLNHLTLSMVNITKE EELEVLGSLEELASLELKLDDTSSSSIERISFLSKLKKLTKLTVKVPSLREIEGLAELKSLQRLNLEGCTSLETLWAPGNQQLDKLKELDIHGCNSLSVD HLSSLKTSLRPDVVIRWPHEEIFSSSGSSELPCGWGHHWVAPVGYIVITVDINGSGQFRPVQAAIDSVPENNDENVLIQLSPGVYMYVRRRILHNYLVIF YEVFSKPYRYRGLTG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27180			disease resistance protein (TI...		Lus10008519 [exp]	0	1
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	2.0	0.8639
AT1G61550			S-locus lectin protein kinase ...		Lus10037730 [exp]	2.4	0.8541
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000154 [exp]	6.2	0.7890
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	11.0	0.8174
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	14.2	0.8128
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10004214 [exp]	17.0	0.7870
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034390 [exp]	19.2	0.8176
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	23.2	0.8000
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	23.4	0.8242
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10022739 [exp]	25.1	0.7871

Compare expression of checked genes

Lus10008519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.