Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 317 / 1e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 278 / 7e-77 transmembrane receptors;ATP binding (.1.2) AT1G27180 269 / 1e-73 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 258 / 2e-70 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G17680 256 / 7e-70 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G72840 248 / 1e-67 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G41540 245 / 8e-67 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 239 / 2e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 236 / 6e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G11170 234 / 7e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008519 [exp] 1436 / 0 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 1415 / 0 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002249 [exp] 1314 / 0 AT5G36930 286 / 2e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 1260 / 0 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007790 [exp] 1234 / 0 AT5G36930 343 / 4e-99 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000738 [exp] 1141 / 0 AT5G36930 191 / 7e-50 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007811 [exp] 970 / 0 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007808 [exp] 853 / 0 AT5G36930 418 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007813 [exp] 785 / 0 AT5G36930 368 / 1e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002400 [exp] 376 / 2e-113 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 380 / 6e-112 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 373 / 1e-110 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 372 / 2e-110 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 370 / 2e-109 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 370 / 2e-109 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 368 / 4e-109 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 367 / 2e-108 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 367 / 3e-108 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 361 / 9e-108 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10008526 pacid=23177376 polypeptide=Lus10008526 locus=Lus10008526.g ID=Lus10008526.BGIv1.0 annot-version=v1.0 ATGGGTTGTATAAGAAAAGCCTTGGTTCTCCCGTTGATTCGTCTCTACAAGTTGTTGTATGGAAGGCGAAGTTCCGATCATGTCAATTCATTTCCCTCCA TGGAGTTACCAGATTCAACATCCAACTCTACAAATCCTTCAGCTACTTCATTTCCCTCTGTGGAGTTAACTGATTCAACTTCTGTTATTGATGCCACATT AATATCCAACGCCACTAACCCCTCAGCTACTTCATTTCCCTCTGTGGAGTATGAGGTGTTTTTGAGTTTCAGGGGTCCAGATACTCGCCATCAGATCACC GACATTCTATATCGTTTCCTATGTCGCACCAAGATCCATACGTTTAAGGACGACAATGAGCTTCGCAAGGGAGAAGAAATAGGGTCCAACCTCCTTCGGG CAATCGATCAGTCCAAAATCTACATCCCAATCATATCAAAGAGTTACGCCGATAGTAAATGGTGTCTTATTGAGCTTGCTGAAATTGTTCGTCGTCAAGA ACAGGACCATCGATGCATCATACTTCCTATTTTTTATATGGTGGATCCAAGAGATGTACGGCGCCAAACTGGACCTTTTCAAAATGCATTTCAAGAACAC ACAACTAAATTCGATAAAAGAAGCTTACAAAGTTGGAAAGATGCTCTAAATAAGGTTGGAGCGTTAAAAGGCTGGCACGTCAAAAGCAACGACGAGCAGG GAGCTATAGCGGATGAAGTTTCGGCACATATATGGTCACATCTAAGTAAGGAAAATCTTATTTTAGGAACTGATGAGTTGGTTGGAATTGACGAACATGT AGAAGCTGTATTAGAAAAGTTGAGTCTAGACTCAAAAGATGTGACAATGGTCGGTCTTTATGGTATGGGCGGAACAGGCAAGACGACCACTGCAAAGGCG ATTTATAACAAGATTTCTTCCATTGCAAAGGCGGTTTATAACAAGATTTCTTCTCATTTCGATCGATGTTGTTTCGTCGATAATGTACGAGCAATGCAAG AGCAGAAGGATGGCATTTTTATTTTGCAAAAGAAGCTGGTATCTGAAATTTTGAGGATGGATTCTGTTGGATTTTCTAATGATAGTGGCGGAAGGAAGAT GATAAAGGAGAGAGTTTCGAAGTTCAAAATTCTCATCGTTCTCGATGATGTTGATGAGAAATTTAAATTTGAAGATATACTCGGTTGTCCTAAAGATTTT GATTCTGGGAGTAGATTCATCATTACTTCAAGAAATCAAAATGTCTTGAGTCCTTTGAATGAGAATCAATGCACGTTGTATGAAGTTGGATCGATGAGCC AACCACATTCTCTTGAACTCTTCTCCAAACATGCGTTCAAAAAGAATAAGCCTCCATCGGATTATGAGACTCTAGCAAATGACGTCGTATATACTGCAGG AGGACTTCCATTGACTCTGAAGGTTATAGGTTCACTTTTATTCAGGCAAGAGATTGGGGTTTGGGAAGATACGTTGGTACAGTTGCGTAAAACACTTAAC CTTGATGAGGTTTATGATAGGCTAAAACTAAGTTTCGATGCGTTGAAGGCGGAGGCAAAAGAGATTTTCTTGGATATAGCTTGCTTCTTCATCGGAACAA TGAAAGAAGCACCATATTACATGTGGAGCGACTGCAATTTCTATCCTAAAAGTAATATTATTTTTCTCGTTCAAAGATGTATGGTGCAAGTTGGAGATGA TGGGGTGCTTCAAATGCACGACCAACTTAGAGATATGGGTAGAGAAATTGTGAGACGAGAGGATGTGGAGCGGCCGTGGAAGAGAAGTAGGATATGGTCA AGCGAAGAAGGAATTGATCTCTTGTTGAACAAAAAGGGATCAAGTCAAGTAAAAGCAATGAGCATAGTGCTGCCCGGGGATGTGCATAAGTTTAAGAGCG AATGTTTCAAGAATATGTCAGGGCTGAGATACTTTTATGCAGAATCAATCATGCTTACCGGAGATTTCAATAATCTTCTCCCGAATTTAAAGTGGCTTCA TTTGTCTGATTACGGACATGGAACGTATGACCCTCCTTTGACCAATTTTACTTTGAAAAATCTGATAATCGTTTTTCTTCAATATAGCACCATAAGGGCT GATGATTGGGGAGGCTTTAGCCATATGATGAAGATGGCTGAGAGGCTCAAAGTTGTACGACTTTCTTTCATCAAATCGGTCCCCGAAAGACTTTCTGTCT GCTGGCGCTTCCCCAAAAGCATTGAGGTATTATCCATATTTGGGATACAGATGGAGGAAGTTGATATTGGGGAGTTAAAGAAGCTAAAGACGTTGGATCT GAGCTACTGTACAATACAAAAGATAAGTGGGGGAACCTTTGGTGTGTTGAAGGGACTCATAGAGCTTGAACTCATCGACTTCAAGTGTACAAATTTGAGA GAGGTAGTGGCCGATATTGGTCAACTTTTTTCTCTCGAAGTCTTGAGAGCTGAGGGGGTCGAGATTAATGAATTTCCATTAGGTTTGAAGGAGTTATCCA CTTCATCTCGGATTCCAAATCTTTCACAGTTGTTGGATTTGGAGTTGCTGAAGGTTGTTGGTTGCAACGATGGATTCGACATCCCTCCTGCTAACAGTGC TGAAGATGAAGGTAGCGTGTGGTGGAAGGTATCCAAGTTGAAGTCTTTGGTACTCATTAAGACAAGAATCAATTTTAATTCGTGTTCAGAACCAACGTGG CTTCCAGAAATAGAAAACTTGGAGAATTTGACTTATCTAGAAGTCTGGGATGTCTTCAAAACTCTTGGAGGTGATTTGGATGGGCTACAAGGGTTGAGAT CGTTGGAAACTCTTACTATTACGGAAGTAAATGGTTTAACTCGGATCAATGGGCTTAAGGATCTCTTGTGTTCTTCTACCTGCAACTTGCAGTCATTAGT GATTGAATACTGCCCTGACCTCACTGAGTTACTCCCATGCGAACTCGACGACCAAACAGTAGTAGTCCCCTCTTTGGTAGAACTGACCATTTGGGGTTGT CCACGGCTAGAGGTTGGCCCGATGATACGATCTCTCCCAAAGTTCCCAATGCTGGAGGAGTTGAGACTCTCGGTGGCAAACATAACTAAAGAGGAGGATC TGGATGTGATTGGATCTCTAGAAGAGTTGGTTGATTTGGAGTTAAAGTTAGACGATACATCTTCCGGTATAGAGAGGATAGCTTCCTTGTCGAAGCTGCA AAAGTTATGGAAGCTTGAAGTGAAGGTGCCGAGTTTGCGGGAGATTGAAGGGCTTGCAGAGTTGAAGTCATTGCAATATTTGTATCTAGAGGGTTGCACG TCGTTGGGGAGACTGTGGCCTGATGAACAGCAGGTGTGTAGTCTGGAGAAGCTGAAGGAGCTCGACATCCGAGGTTGCAAAAGCTTGAGTGTTGATCATC TCTCTGCACTGAAGACCACTCTATCGGGCAAGGTGATCATAACATGGCCCGATGAGAAATACAGACGATAG
AA sequence Show only first row Show all	>Lus10008526 pacid=23177376 polypeptide=Lus10008526 locus=Lus10008526.g ID=Lus10008526.BGIv1.0 annot-version=v1.0 MGCIRKALVLPLIRLYKLLYGRRSSDHVNSFPSMELPDSTSNSTNPSATSFPSVELTDSTSVIDATLISNATNPSATSFPSVEYEVFLSFRGPDTRHQIT DILYRFLCRTKIHTFKDDNELRKGEEIGSNLLRAIDQSKIYIPIISKSYADSKWCLIELAEIVRRQEQDHRCIILPIFYMVDPRDVRRQTGPFQNAFQEH TTKFDKRSLQSWKDALNKVGALKGWHVKSNDEQGAIADEVSAHIWSHLSKENLILGTDELVGIDEHVEAVLEKLSLDSKDVTMVGLYGMGGTGKTTTAKA IYNKISSIAKAVYNKISSHFDRCCFVDNVRAMQEQKDGIFILQKKLVSEILRMDSVGFSNDSGGRKMIKERVSKFKILIVLDDVDEKFKFEDILGCPKDF DSGSRFIITSRNQNVLSPLNENQCTLYEVGSMSQPHSLELFSKHAFKKNKPPSDYETLANDVVYTAGGLPLTLKVIGSLLFRQEIGVWEDTLVQLRKTLN LDEVYDRLKLSFDALKAEAKEIFLDIACFFIGTMKEAPYYMWSDCNFYPKSNIIFLVQRCMVQVGDDGVLQMHDQLRDMGREIVRREDVERPWKRSRIWS SEEGIDLLLNKKGSSQVKAMSIVLPGDVHKFKSECFKNMSGLRYFYAESIMLTGDFNNLLPNLKWLHLSDYGHGTYDPPLTNFTLKNLIIVFLQYSTIRA DDWGGFSHMMKMAERLKVVRLSFIKSVPERLSVCWRFPKSIEVLSIFGIQMEEVDIGELKKLKTLDLSYCTIQKISGGTFGVLKGLIELELIDFKCTNLR EVVADIGQLFSLEVLRAEGVEINEFPLGLKELSTSSRIPNLSQLLDLELLKVVGCNDGFDIPPANSAEDEGSVWWKVSKLKSLVLIKTRINFNSCSEPTW LPEIENLENLTYLEVWDVFKTLGGDLDGLQGLRSLETLTITEVNGLTRINGLKDLLCSSTCNLQSLVIEYCPDLTELLPCELDDQTVVVPSLVELTIWGC PRLEVGPMIRSLPKFPMLEELRLSVANITKEEDLDVIGSLEELVDLELKLDDTSSGIERIASLSKLQKLWKLEVKVPSLREIEGLAELKSLQYLYLEGCT SLGRLWPDEQQVCSLEKLKELDIRGCKSLSVDHLSALKTTLSGKVIITWPDEKYRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	0	1
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	1.0	0.9642
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	2.0	0.9565
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	4.6	0.9489
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	5.0	0.9400
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	5.7	0.9328
					Lus10033952 [exp]	6.0	0.9292
AT5G66900			Disease resistance protein (CC...		Lus10007359 [exp]	6.0	0.9331
AT2G30990			Protein of unknown function (D...		Lus10029830 [exp]	6.3	0.9329
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	6.9	0.9462
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	8.1	0.9387

Compare expression of checked genes

Lus10008526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.