Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30460 496 / 4e-177 Nucleotide/sugar transporter family protein (.1.2) AT1G06890 494 / 2e-176 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G28315 343 / 4e-117 Nucleotide/sugar transporter family protein (.1) AT1G21070 164 / 2e-47 Nucleotide-sugar transporter family protein (.1) AT1G76670 159 / 2e-45 Nucleotide-sugar transporter family protein (.1) AT4G09810 159 / 2e-45 Nucleotide-sugar transporter family protein (.1) AT5G42420 153 / 6e-43 Nucleotide-sugar transporter family protein (.1.2) AT4G39390 148 / 3e-41 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT1G34020 147 / 5e-41 Nucleotide-sugar transporter family protein (.1) AT5G55950 102 / 4e-24 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009918 [exp] 416 / 7e-146 AT1G06890 493 / 7e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10041315 [exp] 325 / 1e-109 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 326 / 7e-109 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10021464 [exp] 321 / 5e-108 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041314 [exp] 264 / 8e-87 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10042217 [exp] 261 / 3e-84 AT1G06890 201 / 1e-61 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10024194 [exp] 246 / 3e-81 AT1G06890 238 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10020837 [exp] 162 / 4e-46 AT4G09810 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10033531 [exp] 159 / 1e-45 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G128900 [exp] 518 / 0 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.013G154800 [exp] 511 / 0 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.009G011100 [exp] 344 / 2e-117 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 341 / 9e-116 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.005G260300 [exp] 166 / 7e-48 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 160 / 6e-46 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 159 / 1e-45 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 155 / 4e-44 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 150 / 4e-42 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.007G077900 [exp] 149 / 1e-41 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10008596 pacid=23180058 polypeptide=Lus10008596 locus=Lus10008596.g ID=Lus10008596.BGIv1.0 annot-version=v1.0 ATGAGTACTACTGAGGACCAGAAGTTCCAGCTGGGCACGGTGGGTGCTTTGAGCTTGTCGGTTGTATCGTCTGTCTCTATTGTCATATGCAACAAGGCGC TTATCAGCACTCTTGGTTTTACTTTCGCCACTACATTAACAAGCTGGCATCTTTTGGTCACATTTTGTTCCCTTCATGTGGCATTGTGGATGAAGTTCTT TGAACACAAGCCTTTTGATGCAAGCGCAGTATTGGGATTTGGCATATTAAATGGGATTTCAATTGGACTTCTAAATCTGAGCTTGGGTTTCAATTCTGTC GGTTTCTACCAGATGACAAAATTAGCAATCATCCCATGCACTGTCCTGCTGGAAACGGTCTTCTTCAGGAAGATATTCAGTCGAAGTATCCAGCTTTCAT TGGTGGTCCTCCTTTTGGGTGTTGGAATTGCAACCGTGACTGATCTTCAGCTGAACATGTTAGGCTCTGTCTTGTCATTGCTTGCAGTTCTCACTACCTG CATTGCTCAAATTGTATCCTTGGCTTTACTAGCTCTTTTCATTTCTACATTGATGCTTCCGGTAGTAAAGCCGGTAAAAAGATGCCAGATGACAAATACT ATCCAGAAGAAGTACAAGGTTTCTTCAACCCAGCTTCTGTACCAGTCTTGCCCCTACCAGGCTCTAACTCTGTTCATCGTCGGCCCGTTCCTGGACGGCG TATTGACTGATCAAAATGTTTTCGCTTTCAAGTACACCCCTCAAGTCCTTTTCTTCATCGTTCTTTCCTGCCTGATATCCGTCTCAGTAAATTTCAGTAC GTTTCTCGTGATTGGAAAGACATCTCCAGTCACCTACCAGGTCCTAGGCCATTTGAAAACGTGCCTAGTTCTGGCATTCGGGTACGTACTGCTTCGTGAC CCATTTAGCTGGAGAAACATCTTAGGTATCCTTATCGCCATAGTTGGGATGGTTCTGTATTCATACTGTTGCACGTTGGAGAGCCAGCAGAAGTCTGAAG AGCCACCAGCTAAACAGCCTGAGGTTGACGAAAGTGAGTGCGATCCCCTGATGGATGCGGAGAATGGGAGTGGAGGAGATGGTGGCGTAAAAGCCCCAGC ATGGAAGTCGAACAAGGACCTGGATGCATGA
AA sequence Show only first row Show all	>Lus10008596 pacid=23180058 polypeptide=Lus10008596 locus=Lus10008596.g ID=Lus10008596.BGIv1.0 annot-version=v1.0 MSTTEDQKFQLGTVGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVALWMKFFEHKPFDASAVLGFGILNGISIGLLNLSLGFNSV GFYQMTKLAIIPCTVLLETVFFRKIFSRSIQLSLVVLLLGVGIATVTDLQLNMLGSVLSLLAVLTTCIAQIVSLALLALFISTLMLPVVKPVKRCQMTNT IQKKYKVSSTQLLYQSCPYQALTLFIVGPFLDGVLTDQNVFAFKYTPQVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRD PFSWRNILGILIAIVGMVLYSYCCTLESQQKSEEPPAKQPEVDESECDPLMDAENGSGGDGGVKAPAWKSNKDLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30460			Nucleotide/sugar transporter f...		Lus10008596 [exp]	0	1
AT5G62440			Protein of unknown function (D...		Lus10024824 [exp]	2.4	0.5757
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009566 [exp]	7.3	0.5702
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10042551 [exp]	23.7	0.5073
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10014786 [exp]	24.4	0.5055
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10008592 [exp]	34.0	0.5429
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10019630 [exp]	41.4	0.5364
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10038317 [exp]	49.6	0.4856
					Lus10000350 [exp]	63.5	0.4673
					Lus10022857 [exp]	67.0	0.4738
AT3G02280			Flavodoxin family protein (.1)		Lus10033550 [exp]	70.4	0.4431

Compare expression of checked genes

Lus10008596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.