Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11440 342 / 1e-109 MYB AtMYB65 myb domain protein 65 (.1) AT5G06100 329 / 6e-105 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT5G55020 219 / 2e-63 MYB ATMYB120 myb domain protein 120 (.1) AT2G32460 217 / 4e-63 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT4G26930 204 / 2e-59 MYB ATMYB97 myb domain protein 97 (.1) AT2G26960 202 / 3e-58 MYB ATMYB81 myb domain protein 81 (.1) AT3G02940 162 / 1e-44 MYB ATMYB107 myb domain protein 107 (.1) AT4G28110 160 / 3e-44 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 160 / 1e-43 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G61250 159 / 1e-43 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026142 [exp] 1197 / 0 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10036103 [exp] 315 / 8e-100 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10026787 [exp] 311 / 1e-98 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10040063 [exp] 218 / 2e-63 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10027189 [exp] 216 / 7e-62 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 216 / 1e-61 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 216 / 4e-61 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10036472 [exp] 162 / 1e-44 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10041142 [exp] 162 / 1e-44 AT1G34670 315 / 2e-106 myb domain protein 93 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G189700 [exp] 611 / 0 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 595 / 0 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.009G018700 [exp] 354 / 1e-114 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.001G224500 [exp] 353 / 4e-114 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.002G228700 [exp] 211 / 8e-61 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.013G130900 [exp] 199 / 6e-55 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.007G093900 [exp] 166 / 2e-45 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 162 / 2e-44 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.003G094200 [exp] 162 / 3e-44 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2) Potri.001G139900 [exp] 161 / 4e-44 AT5G16770 254 / 7e-83 myb domain protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008685 pacid=23161925 polypeptide=Lus10008685 locus=Lus10008685.g ID=Lus10008685.BGIv1.0 annot-version=v1.0 ATGAGTCACATGACAAATGAAAGCAAAGACCGTTTCCTTGCCAACGACCAAATTGAATCTCCGTTGGCCGATGAAGGAAATTCCAGTAGGAAGGGAAATG GGGAAACGAATCTCAAGAAAGGCCCATGGACAGCTGCTGAAGATGCAATCTTGATAGAGTACGTAAAGAAGAACGGGGAAGGTAACTGGAATGCTGTTCA GAAGCATTCCGGTCTTTCTCGTTGTGGAAAAAGCTGCCGATTGCGATGGGCCAATCACCTCAGGCCAAACTTGAAAAAAGGAGCATTTACCCAGGAAGAA GAACAGCTAATTATTGAACTTCATGCCAAAATGGGGAACAAATGGGCTCGCATGGCTGCTCATTTGCCTGGACGTACAGACAATGAAATAAAGAACTACT GGAACACCAGAATCAAGCGACGTCTAAGGGCTGGTTTACCTCTTTATCCCCCCGACTTATCTTCACACTCGTATCGGGATAATCAATGGGATCTAAACAT AGGTGGTATCAATTGCGGGCGCAAAGGGCATCATGAGCTCTTGCACAACTGCCATGAGATTCCTGATGCTACATTTGACAGCTTAAAAGCTAGTCAGATC AGGGTATCGAATTCTCTCCCTGAACTAGCTGATATTAATTCAAGTCAGATGTTGATAAAAGGGCTGGGTTCTTCTCAATACGGAAGCTTCATTTCTCCAT TGATGCATAGCAAAAAACGGCTTCGAGAATCAACATCTTCTCAGTTATCTGGATTCAACGTCAATGGAAGAAATGACTTTTCACTGTTTGGCTTTCAGAA TGATCTCCGTGAGAAGGCTACTCAGTCCTTTGGATTGTCTTATCCATTTGATTCTGATCCCAACACCAAGATCCAGCATCGACACGGTGTTGGCGACGAT CAGGACCGCCATACCCAGTCGTACGGCATTTTCTCTGCTTCTAAGCCCAATTCCGGGGCTGTGAAGTCGGAGCTCCCTTCACTCCAATATACCGAAAACG ATGCAAGCAGCTGCTGGGGAATATCTTCTCCGCCACCTCTGCTTGAGTCGTATGATAACTTTATCCAGTCTCTACCTACGGGTACGGTTGGATCAAGCTA TCTTTCGCCGCGTAACAGTGGCCTACTTGATGCTTTACTCCACGAGGCGAAAACTCTTAGTACTGCAAAGAAGCATTCCTCTGAGAAGAGTTCGAATTCT TCAACCGTCACCCCTGGAGATATTGCAGACAGTTTGAGTCCTAACGGCCATGATCCAGAGTGGGATAACTACGGTGACCCCCTTTCTCCCACTGCGACAT CGTATTTCAGTAAACGCAGCACCCCTATCAGTGCCAGTGGAAGTTCGTTAGATGAACAACCACCTATTGAGACCTTTACTGGTTGTGATTCATCAGTCTC ACGTATTGAACTTGTTGCAGGTTGTGACATAAAAACGGAAGCTTTGACACCGGAAAGAGAGAGGGATGCCGTTAAGCGTCAACCCGACGCTTTACTCGAT TCGGACTGGCTCGAGCAGGGTTCGGGTGGTAGCTACGTCAAGGATCAAGTCGTGATGACGGATGCCATAGCAGCGCTGCTCGGTGATGATTTGAGCAGTG AATATAAGCAGATGGCTGGAGCAGGTACGTCGTCGGGGGCTAGTCAAGGATGGGTACTGGGTTCTTGTACTTGGAACAACATGCCTCCTGACAAACTCCT TGCTAAGCATGCTCATGTGCACTGGTGTGCTCTGATTCGGAGGGGCCCTTGCATCCCAAAGCACTGCTTTGTTGCTTGGCTCGCTCTGCATAAACGTTTG GTTAAACACTCGCTGATGGCGTCGTGGGGGCTGAGCTTGGACATCTTTTGCTTCCTCTGCTCAAATGGTGCTGATGAGCTTTCTCATCTGACGGTGGATT GCGATTTCAGGAAGACCATCCGTAATTTCTGTTTGGGGCGTGACGACACTCTTTTCTTGGATTGGACTGATTTTGTGGCACCATTCTCGAGCCTTCACTA TGGTAATCGGTGCGTCTGCTTGCTCGGGACGGCTTTTCTAGAGGGCTAG
AA sequence Show only first row Show all	>Lus10008685 pacid=23161925 polypeptide=Lus10008685 locus=Lus10008685.g ID=Lus10008685.BGIv1.0 annot-version=v1.0 MSHMTNESKDRFLANDQIESPLADEGNSSRKGNGETNLKKGPWTAAEDAILIEYVKKNGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTQEE EQLIIELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRLRAGLPLYPPDLSSHSYRDNQWDLNIGGINCGRKGHHELLHNCHEIPDATFDSLKASQI RVSNSLPELADINSSQMLIKGLGSSQYGSFISPLMHSKKRLRESTSSQLSGFNVNGRNDFSLFGFQNDLREKATQSFGLSYPFDSDPNTKIQHRHGVGDD QDRHTQSYGIFSASKPNSGAVKSELPSLQYTENDASSCWGISSPPPLLESYDNFIQSLPTGTVGSSYLSPRNSGLLDALLHEAKTLSTAKKHSSEKSSNS STVTPGDIADSLSPNGHDPEWDNYGDPLSPTATSYFSKRSTPISASGSSLDEQPPIETFTGCDSSVSRIELVAGCDIKTEALTPERERDAVKRQPDALLD SDWLEQGSGGSYVKDQVVMTDAIAALLGDDLSSEYKQMAGAGTSSGASQGWVLGSCTWNNMPPDKLLAKHAHVHWCALIRRGPCIPKHCFVAWLALHKRL VKHSLMASWGLSLDIFCFLCSNGADELSHLTVDCDFRKTIRNFCLGRDDTLFLDWTDFVAPFSSLHYGNRCVCLLGTAFLEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10008685 [exp]	0	1
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10006844 [exp]	8.0	0.8574
AT3G28410			F-box/RNI-like superfamily pro...		Lus10029357 [exp]	15.4	0.7227
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10027482 [exp]	17.3	0.8362
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10002407 [exp]	17.7	0.8315
AT2G01460			P-loop containing nucleoside t...		Lus10025598 [exp]	21.2	0.8447
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10010754 [exp]	24.5	0.8154
AT5G27860			unknown protein		Lus10020665 [exp]	26.3	0.7750
AT3G06290		AtSAC3B	yeast Sac3 homolog B, SAC3/GAN...		Lus10012769 [exp]	29.0	0.8319
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10027600 [exp]	30.1	0.8333
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10036995 [exp]	30.2	0.8353

Compare expression of checked genes

Lus10008685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.