Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 241 / 5e-77 ATPUP3 purine permease 3 (.1) AT1G28230 221 / 5e-69 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 211 / 2e-65 ATPUP2 purine permease 2 (.1.2) AT4G18210 143 / 6e-39 ATPUP10 purine permease 10 (.1) AT4G18220 141 / 1e-38 Drug/metabolite transporter superfamily protein (.1) AT1G30840 127 / 4e-33 ATPUP4 purine permease 4 (.1.2) AT1G44750 119 / 2e-30 ATPUP11 purine permease 11 (.1.2.3) AT4G18190 114 / 3e-28 ATPUP6 purine permease 6 (.1) AT4G08700 107 / 4e-26 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT4G18205 107 / 8e-26 AT4G18200 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020937 [exp] 504 / 2e-180 AT1G28220 258 / 3e-84 purine permease 3 (.1) Lus10020939 [exp] 475 / 1e-168 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10008714 [exp] 473 / 1e-167 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10008212 [exp] 453 / 2e-159 AT1G28220 293 / 7e-97 purine permease 3 (.1) Lus10026807 [exp] 347 / 2e-118 AT1G28220 273 / 7e-90 purine permease 3 (.1) Lus10036075 [exp] 345 / 2e-117 AT1G28220 273 / 5e-90 purine permease 3 (.1) Lus10020950 [exp] 282 / 2e-92 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 254 / 2e-82 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10041133 [exp] 231 / 2e-73 AT1G28220 392 / 1e-136 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099600 [exp] 328 / 4e-111 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.005G160300 [exp] 265 / 5e-86 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.001G352100 [exp] 149 / 2e-41 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G147600 [exp] 148 / 9e-41 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.014G043900 [exp] 147 / 2e-40 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.003G156900 [exp] 142 / 2e-38 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G352200 [exp] 141 / 2e-38 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.006G184900 [exp] 129 / 5e-34 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.001G074100 [exp] 121 / 4e-31 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10008713 pacid=23161945 polypeptide=Lus10008713 locus=Lus10008713.g ID=Lus10008713.BGIv1.0 annot-version=v1.0 ATGGACATGGAGATGGTACCATCCTCAAGCAAGATCATCAACACTGAACCAACACAAATCCCAGAACCCAACAACAACAACAAAATCAACAACCGTATGA AAACATTCCTCCTCCTTTTCAACTGCCTCATACTAACCGTCGGCCAAGTCGCCGGCCCAATCCTCGGCCGGATGTACTTCATCCACGGCGGAAAAAAGTT ATGGCTCTCAACATGGGCCAACACCGCCGGCTTCCCAATCCTCCTAATCCCAATTTCCATCTCCTACTTCGCCACCCCACCCGCAAAACGCCGCCGTTTC CTCCCCTCCAGGTGGCTCGCCTCCGCGAGCGCCCTTCTCGGAATCCTCCTCGGCTTCGACTGCTACCTCTACTCTTTTGGCACCGCTTACCTCCCCGTCT CCGTCATCTCCCTCGTCAGCTCGTCCCAGCTGGCGTTCACCGCCGTCATGGCGTTCTTCATCGTGAAGCAGAAGTTCACTCACTACTCGATAAACGCCGT CGTGTTGATGACGTTGGGGTCCGTCGTTCTGGGGCTTCATATGGATCAGGATGTTCCCAAAGGGGAGCCGCGGCATACTTACGTTTTGGGGTTTCTCATA ACGATTGCCGCTGCCATAGGTCATGGGCTTTTCCTGACGTTGATTGAGTATACGAGGATGAAAGCTGGGGTTGAGATTACGTTCGACATTGTCATGCAGA TGCAGTTCGTTATGTCTATGTTCGCTACTCTGGTTTCCACTGTCCCCATGGTTATCAACAACGACTTTCAGGGTATGGAGGAGGAGGCGGCGGAATTCAA CCTCGGGGTCAGAAAGTACTACGTGATAATATTCCTAGGAGCAGTAGCGTTGCAGCTAATGATAATCGGAATATTCGGAGTGGTGTTCAGCTCCTCGTCC TTGTTCGGCGGAATAATGACGGCGCTTCTGGTTCCAGTCCAACAAGTGTTTGCTGTCATATTTCTCAAGGAAGGATTTAACGCCGAGAAAGGGATGGCTC TTGCACTCTGCCTGTGGGGGTTCACGTCTCACTTGTACGGCGGCTACACGACTTCCAAATTGAAGAAACAAGGACAGAACGACGACGCTGCATGTAAAGA CGATCGAGACAATCACGTCTAA
AA sequence Show only first row Show all	>Lus10008713 pacid=23161945 polypeptide=Lus10008713 locus=Lus10008713.g ID=Lus10008713.BGIv1.0 annot-version=v1.0 MDMEMVPSSSKIINTEPTQIPEPNNNNKINNRMKTFLLLFNCLILTVGQVAGPILGRMYFIHGGKKLWLSTWANTAGFPILLIPISISYFATPPAKRRRF LPSRWLASASALLGILLGFDCYLYSFGTAYLPVSVISLVSSSQLAFTAVMAFFIVKQKFTHYSINAVVLMTLGSVVLGLHMDQDVPKGEPRHTYVLGFLI TIAAAIGHGLFLTLIEYTRMKAGVEITFDIVMQMQFVMSMFATLVSTVPMVINNDFQGMEEEAAEFNLGVRKYYVIIFLGAVALQLMIIGIFGVVFSSSS LFGGIMTALLVPVQQVFAVIFLKEGFNAEKGMALALCLWGFTSHLYGGYTTSKLKKQGQNDDAACKDDRDNHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008713 [exp]	0	1
AT4G15620			Uncharacterised protein family...		Lus10031998 [exp]	16.4	0.6839
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10032041 [exp]	18.7	0.6671
AT1G76750			Protein of unknown function (D...		Lus10027057 [exp]	20.7	0.6531
AT1G30950		UFO	UNUSUAL FLORAL ORGANS, F-box f...		Lus10007755 [exp]	24.9	0.6286
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10011604 [exp]	25.3	0.6285
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10038514 [exp]	28.6	0.6620
					Lus10011249 [exp]	35.6	0.6595
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035207 [exp]	46.5	0.6367
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	48.8	0.6027
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10000029 [exp]	52.0	0.6164

Compare expression of checked genes

Lus10008713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.