Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 252 / 3e-81 ATPUP3 purine permease 3 (.1) AT1G28230 228 / 7e-72 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 216 / 3e-67 ATPUP2 purine permease 2 (.1.2) AT4G18220 154 / 1e-43 Drug/metabolite transporter superfamily protein (.1) AT1G30840 150 / 8e-42 ATPUP4 purine permease 4 (.1.2) AT4G18210 144 / 2e-39 ATPUP10 purine permease 10 (.1) AT1G44750 128 / 1e-33 ATPUP11 purine permease 11 (.1.2.3) AT4G18195 121 / 7e-31 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G08700 115 / 4e-29 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT2G24220 114 / 2e-28 ATPUP5 purine permease 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020939 [exp] 616 / 0 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10008713 [exp] 490 / 2e-174 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10008212 [exp] 469 / 5e-166 AT1G28220 293 / 7e-97 purine permease 3 (.1) Lus10020937 [exp] 426 / 6e-150 AT1G28220 258 / 3e-84 purine permease 3 (.1) Lus10026807 [exp] 347 / 1e-118 AT1G28220 273 / 7e-90 purine permease 3 (.1) Lus10036075 [exp] 346 / 4e-118 AT1G28220 273 / 5e-90 purine permease 3 (.1) Lus10020950 [exp] 283 / 3e-93 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 253 / 5e-82 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10036465 [exp] 247 / 9e-79 AT1G28220 394 / 1e-136 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G099600 [exp] 348 / 6e-119 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.005G160300 [exp] 277 / 6e-91 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.014G043900 [exp] 154 / 2e-43 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G147600 [exp] 152 / 2e-42 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 149 / 3e-41 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G352200 [exp] 143 / 3e-39 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.006G184900 [exp] 140 / 2e-38 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.003G156900 [exp] 138 / 5e-37 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 118 / 5e-30 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10008714 pacid=23161931 polypeptide=Lus10008714 locus=Lus10008714.g ID=Lus10008714.BGIv1.0 annot-version=v1.0 ATGTTGGAAATGGAAATGAACCCTGCAACCCAGAAAAACCAAGCGACAAAAACAATACTCCATTTCCAACCCAGCATCAAAACATTCCTCCTCCTCTTAA ACTGCGTCATACTAACCGTCGGCCAAGTCGCCGGCCCACTCCTCGGCCGGATGTACTTCATCCACGGCGGCAAAAAGCTCTGGCTCTCAACTTGGGCCAA CACCGCCGGCTTCCCCATCCTCCTTATCCCGATCTTCATTTCCTACAAAGTCGCCAAAACCACCCGACCAAATGACAGCTCCTTTTTTCCCTCAAGGTGG CTCGTCGGAGCAAGCGCGTTGCTCGGGATCCTCCTCGGATTCGACTGCTACCTCTACTCTTTCGGGACCGCTTACCTCCCCGTCTCCGTTATCTCCCTCG TCAGCTCGTCCCAGCTGGCGTTCACCGCCGTGCTGGCGTTTTTCATCGTGGGACAGAAGTTCACTCACTACTCGATAAACGCCGTCGCTCTGATGACGTT TGGTTCGGTTATTCTTGGACTTCACATGGATCAGGATGTTCCGAAAGGGGAGTCTCGTCAGAAGTATGTTATGGGTTTCCTTATAACGCTTGCTGCTGCT GCCGGTCATGGCCTTTTCCTGACGTTGATCGAATATACGAGAATGAGACCCGGGATTACCATCACTTTCGATATCGTCATGCAGCTTCAGTTCATCATGT CCATGTTCGCTACGATTTTTTCTACCATCCCCATGATCATCAACAACGACTTTCAGAGCATGGCGGCAGAGGCGGCGGAGTTCGATCTCGGCGCGACAAA GTACTACATGATAATATTCCTAGGAGCGGTAGCCTTACAGCTAATGATAATCGGAATATTCGGGGTGGTGTTCAGCTCCTCTTCCTTGTTCGGCGGAATA ATGACGGCGCTTCTGGTTCCGGTCCAACAGGTGTTTGCTGTCATATTTCTCAAGGAAGGGTTTAATCCCGAGAAAGGGATGGCTCTTGCACTGTGCCTGT GGGGGTTTACGTCACACATGTACGGTGGATACAAGGCTACCTTGTCGAAGAAAGGATCGGACGGTTCTGATGGCAAAGACCAAAACTCGGTCTGA
AA sequence Show only first row Show all	>Lus10008714 pacid=23161931 polypeptide=Lus10008714 locus=Lus10008714.g ID=Lus10008714.BGIv1.0 annot-version=v1.0 MLEMEMNPATQKNQATKTILHFQPSIKTFLLLLNCVILTVGQVAGPLLGRMYFIHGGKKLWLSTWANTAGFPILLIPIFISYKVAKTTRPNDSSFFPSRW LVGASALLGILLGFDCYLYSFGTAYLPVSVISLVSSSQLAFTAVLAFFIVGQKFTHYSINAVALMTFGSVILGLHMDQDVPKGESRQKYVMGFLITLAAA AGHGLFLTLIEYTRMRPGITITFDIVMQLQFIMSMFATIFSTIPMIINNDFQSMAAEAAEFDLGATKYYMIIFLGAVALQLMIIGIFGVVFSSSSLFGGI MTALLVPVQQVFAVIFLKEGFNPEKGMALALCLWGFTSHMYGGYKATLSKKGSDGSDGKDQNSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008714 [exp]	0	1
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020939 [exp]	3.6	0.8590
AT5G59050			unknown protein		Lus10001626 [exp]	8.9	0.8243
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	11.2	0.7907
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	14.7	0.7934
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	14.9	0.7801
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	15.0	0.7724
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	16.0	0.8016
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	17.9	0.7321
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10007849 [exp]	20.4	0.7549
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	27.5	0.7325

Compare expression of checked genes

Lus10008714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.