Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72230 124 / 7e-36 Cupredoxin superfamily protein (.1) AT1G22480 111 / 3e-31 Cupredoxin superfamily protein (.1) AT2G32300 103 / 4e-27 UCC1 uclacyanin 1 (.1) AT5G07475 99 / 8e-26 Cupredoxin superfamily protein (.1) AT3G60270 96 / 6e-25 Cupredoxin superfamily protein (.1) AT3G27200 95 / 1e-24 Cupredoxin superfamily protein (.1) AT2G26720 91 / 7e-23 Cupredoxin superfamily protein (.1) AT2G44790 91 / 1e-22 UCC2 uclacyanin 2 (.1) AT2G31050 90 / 2e-22 Cupredoxin superfamily protein (.1) AT5G26330 89 / 2e-22 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020944 [exp] 233 / 9e-79 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10027043 [exp] 115 / 2e-32 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10025580 [exp] 112 / 5e-31 AT1G72230 112 / 4e-31 Cupredoxin superfamily protein (.1) Lus10012085 [exp] 100 / 1e-26 AT5G07475 142 / 4e-43 Cupredoxin superfamily protein (.1) Lus10007027 [exp] 97 / 1e-25 AT5G26330 100 / 5e-27 Cupredoxin superfamily protein (.1) Lus10006682 [exp] 96 / 4e-25 AT2G32300 95 / 1e-24 uclacyanin 1 (.1) Lus10006657 [exp] 100 / 5e-25 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10038098 [exp] 99 / 1e-24 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10027143 [exp] 96 / 1e-24 AT2G32300 137 / 9e-40 uclacyanin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G101300 [exp] 155 / 4e-48 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 154 / 5e-47 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.013G061300 [exp] 107 / 7e-30 AT3G17675 102 / 1e-28 Cupredoxin superfamily protein (.1) Potri.003G150300 [exp] 102 / 1e-27 AT5G07475 178 / 2e-57 Cupredoxin superfamily protein (.1) Potri.013G030000 [exp] 102 / 1e-27 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.013G030450 [exp] 102 / 1e-27 AT3G17675 106 / 2e-30 Cupredoxin superfamily protein (.1) Potri.014G049600 [exp] 102 / 3e-27 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 100 / 9e-27 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1) Potri.003G117900 [exp] 98 / 8e-26 AT3G17675 108 / 6e-31 Cupredoxin superfamily protein (.1) Potri.001G080700 [exp] 98 / 8e-26 AT5G07475 164 / 1e-51 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10008720 pacid=23161993 polypeptide=Lus10008720 locus=Lus10008720.g ID=Lus10008720.BGIv1.0 annot-version=v1.0 ATGGCAACCTCTGCCTCGTACGTTATTTTCTGCCTAGTTATGCTGGTTGTGCCTACCACTCTCGCCACCACTTACACCGTCGGCGACACCAGCGGCTGGG TAATTGGCTCGGACTACTCCACTTGGACCTCCGGCAAGACCTTCAAAGTCGGCGACAGCCTCGTGTTCAACTACGCGGGAGGGCACACGGTGGACGAGGT GAGCGGGAGCGACTACAACACGTGTACTGTGGGGAAAACAATCAGCTCCGACAACAGCGGATCCACCACCGTCACTCTCAATACCGCCGGCACCCATTAC TTCATCTGCGGTGTGGCCGGCCACTGCAGCGGCGGTATGAAGCTCTCCGTCACAGTTGCGGCTGCAGGGTCCACCGCTCCCCCCACTACATCCACTACTT CCCCTGCATCTCCATCGTCCGGCGGCACTTCTACCGGAACTGCTACTCCGACAACCAACCGTCCGGCGTCCAATATGCCGGATTCTTCTTCCCTTGCCAC TGTTTCTCCGTCGATGGGAGCTGTTGTGGCTGCCGTTTTTGCAGCTGTTGCGGTCATGGTTTCGTCATCGTGA
AA sequence Show only first row Show all	>Lus10008720 pacid=23161993 polypeptide=Lus10008720 locus=Lus10008720.g ID=Lus10008720.BGIv1.0 annot-version=v1.0 MATSASYVIFCLVMLVVPTTLATTYTVGDTSGWVIGSDYSTWTSGKTFKVGDSLVFNYAGGHTVDEVSGSDYNTCTVGKTISSDNSGSTTVTLNTAGTHY FICGVAGHCSGGMKLSVTVAAAGSTAPPTTSTTSPASPSSGGTSTGTATPTTNRPASNMPDSSSLATVSPSMGAVVAAVFAAVAVMVSSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72230			Cupredoxin superfamily protein...		Lus10008720 [exp]	0	1
AT1G72230			Cupredoxin superfamily protein...		Lus10020944 [exp]	1.4	0.9112
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040697 [exp]	1.7	0.9345
AT2G28760		UXS6	UDP-XYL synthase 6 (.1.2.3)		Lus10005155 [exp]	6.6	0.8839
AT5G40630			Ubiquitin-like superfamily pro...		Lus10032107 [exp]	7.1	0.8933
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10009440 [exp]	12.5	0.8511
AT3G27200			Cupredoxin superfamily protein...		Lus10041570 [exp]	23.6	0.8813
AT1G52330			Late embryogenesis abundant (L...		Lus10037534 [exp]	24.5	0.8490
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021240 [exp]	24.7	0.8327
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042314 [exp]	25.9	0.8785
AT2G40370		LAC5	laccase 5 (.1)		Lus10017426 [exp]	31.0	0.8673

Compare expression of checked genes

Lus10008720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.