Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46620 422 / 1e-143 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 224 / 4e-67 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G17730 218 / 6e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 214 / 2e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G18193 213 / 6e-63 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 212 / 2e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 214 / 3e-62 BCS1 cytochrome BC1 synthesis (.1) AT4G25835 209 / 4e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 209 / 4e-61 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT5G40000 207 / 9e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022362 [exp] 567 / 0 AT2G46620 362 / 8e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030220 [exp] 458 / 1e-157 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10005991 [exp] 454 / 5e-156 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 229 / 7e-69 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025989 [exp] 224 / 5e-68 AT3G50930 445 / 1e-153 cytochrome BC1 synthesis (.1) Lus10014284 [exp] 222 / 5e-66 AT3G50930 535 / 0.0 cytochrome BC1 synthesis (.1) Lus10015802 [exp] 217 / 2e-64 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028463 [exp] 215 / 9e-64 AT3G50930 340 / 2e-111 cytochrome BC1 synthesis (.1) Lus10041918 [exp] 218 / 1e-63 AT3G50930 383 / 2e-126 cytochrome BC1 synthesis (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007800 [exp] 513 / 2e-179 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G020800 [exp] 512 / 8e-179 AT2G46620 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G102300 [exp] 459 / 3e-158 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 454 / 4e-156 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 270 / 5e-84 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 269 / 9e-84 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G019600 [exp] 227 / 5e-68 AT1G43910 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G032700 [exp] 223 / 7e-67 AT3G50930 437 / 1e-149 cytochrome BC1 synthesis (.1) Potri.008G177200 [exp] 224 / 9e-67 AT3G50940 401 / 4e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G057900 [exp] 220 / 5e-66 AT3G50930 396 / 1e-133 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10008834 pacid=23169162 polypeptide=Lus10008834 locus=Lus10008834.g ID=Lus10008834.BGIv1.0 annot-version=v1.0 ATGCACCTCCTCCTCGCCGTCGCTGCAACTCTGGCATCCGCATTCGCCCTCTTCCGATTCCTCACTCGCACTTCCTTCCTCCAAATCGTCGCCAAAACCT GGGACGCAATTATTCACGACCGCCTCCACCTTCACCAGACCTACAGAGTGCCTCAATTCAATCCAAACACCCATCTTCCTAACCCTCTCTATTCCAAAGT CTCCGCCTACCTCTCTTCCCTCCAGGACGACTCCGCCGCTGATTTCACCAACCTCCTATCCGGCCCTAACCCCTCCCACGACATCATCCTCTCCCTCGAC CCCAGCCACCTCCTCCGCGACCGCTTCCTCGGAGCCTCCCTTTCCTGGTCCAACTACCCATCCTCCGATGACGACCAATCCGGGCGTACTCTCGTCCTCC GCCTCCGTAAGAAGGACAAACGCCGCATCCTTCGCCCCTATTTGCAACACGTCCTATCCGTCTCTGATGATGTCGTAAAGGAGATTCAATTGTTCATGAA TATCGATGTCTCCGATGAATTTAGCGGCAGGTGGAGGTCGGTTCCGTTCACGCATCCGGCGACTCTGGACACGGTGGTTATGGACGAGGATCTGAAGAGT AAGGTGAAATCTGATTTGGAATTGTTTTTCAAATCGAAGCAGTACTACCGCCGCCTCGGCCGCGATTGGAAGCGAAGTTACCTCCTGTACGGCGCCTCAG GGACGGGTAAATCGAGCTTCGTCGCCGCCATGGCGAGATTCCTAGGGTTTGATATCTACGAAATCGATATCTCCAAGATCCGAAACGACTCGGATCTGAA AACGCTCCTTCTCCATACGACGAGCAGGTCCATGATCGTAATCGAGGATCTGGACCGTTACCTAGTGGCGAAGAACAACAATAGGCAGTTGAATTCCAAG GATTTGACGAATAACCTTACTGGAGTGCTGAATTTCATGGACGGAATCATGTCATGCTTCGGCGAGGAGAGGGTGATGGTCTTCACGATGAGCTCCAAGG ACGGAATTGATCCTGCGATTCTACGGCCGGGGAGAATCGACGTCCAAGTCCATTTCCCCCTTTGCGATTTCCCGGCGATCAAGAGCCTGGCAAGCAATTA CCTGGGAGTTAAAGACCACAAGCTGTTCCCTCAGGTGGAGGAGATTCTACAGAGCGGTGGAGAGAGCTTGAGCCCGGCAGAGATCGGGGAAATCATGATC TCAAACAGAGGTTCACCGAGCAGAGCTCTGAAGTCGGTGATTACTGCTCTCCAGGCTTCCGGGAGTAGAGGATCGAACAGTAACGATAACAGTGTTATTA AATTGTTGAGGGATAGCAGTAGATCGTCTACCGCGACGTCGACGGCGGCTACGGCGACGGAAGAAGGCGGAGGAGTGTTTTGCAGGGAGAGCGTTCACAC GGTGAGGGAGTTCAGGAAATTGTATGGACTGTTGAAAATGGGGAGCCGGAGGAAAGACGAGAGTTCTGTATTGGTTGCTTCTTCCGAAATGGGTGGGCCT GGATCCGGCCCGTTTGAGAAAGACAAGGAAGGGAGAATCGAGCCCACCAAATCTTGA
AA sequence Show only first row Show all	>Lus10008834 pacid=23169162 polypeptide=Lus10008834 locus=Lus10008834.g ID=Lus10008834.BGIv1.0 annot-version=v1.0 MHLLLAVAATLASAFALFRFLTRTSFLQIVAKTWDAIIHDRLHLHQTYRVPQFNPNTHLPNPLYSKVSAYLSSLQDDSAADFTNLLSGPNPSHDIILSLD PSHLLRDRFLGASLSWSNYPSSDDDQSGRTLVLRLRKKDKRRILRPYLQHVLSVSDDVVKEIQLFMNIDVSDEFSGRWRSVPFTHPATLDTVVMDEDLKS KVKSDLELFFKSKQYYRRLGRDWKRSYLLYGASGTGKSSFVAAMARFLGFDIYEIDISKIRNDSDLKTLLLHTTSRSMIVIEDLDRYLVAKNNNRQLNSK DLTNNLTGVLNFMDGIMSCFGEERVMVFTMSSKDGIDPAILRPGRIDVQVHFPLCDFPAIKSLASNYLGVKDHKLFPQVEEILQSGGESLSPAEIGEIMI SNRGSPSRALKSVITALQASGSRGSNSNDNSVIKLLRDSSRSSTATSTAATATEEGGGVFCRESVHTVREFRKLYGLLKMGSRRKDESSVLVASSEMGGP GSGPFEKDKEGRIEPTKS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46620			P-loop containing nucleoside t...		Lus10008834 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	5.6	0.9860
AT2G26530		AR781	Protein of unknown function (D...		Lus10021757 [exp]	9.4	0.9766
AT3G47570			Leucine-rich repeat protein ki...		Lus10033384 [exp]	10.2	0.9673
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	10.5	0.9850
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	10.8	0.9841
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Lus10030530 [exp]	12.7	0.9828
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	14.3	0.9837
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	14.3	0.9840
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10030531 [exp]	17.1	0.9834
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	17.1	0.9835

Compare expression of checked genes

Lus10008834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.