Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27680 650 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 608 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 293 / 2e-89 AAA-type ATPase family protein (.1.2) AT4G02480 289 / 1e-87 AAA-type ATPase family protein (.1) AT4G24860 287 / 1e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 282 / 2e-87 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G50140 284 / 4e-87 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19740 280 / 2e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52882 267 / 1e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 265 / 3e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022361 [exp] 778 / 0 AT4G27680 632 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024692 [exp] 290 / 2e-90 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 283 / 1e-87 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10017535 [exp] 281 / 6e-87 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10036347 [exp] 284 / 7e-86 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010282 [exp] 281 / 5e-85 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10010204 [exp] 273 / 6e-83 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027551 [exp] 266 / 3e-81 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 264 / 1e-80 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G007700 [exp] 660 / 0 AT4G27680 615 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G025351 [exp] 329 / 9e-112 AT4G27680 322 / 5e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 285 / 2e-88 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.014G131000 [exp] 286 / 7e-87 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.012G096300 [exp] 285 / 2e-86 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.002G205900 [exp] 285 / 3e-86 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.003G133700 [exp] 278 / 6e-86 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G094100 [exp] 282 / 3e-85 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.015G026900 [exp] 274 / 1e-84 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 273 / 4e-84 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10008835 pacid=23169159 polypeptide=Lus10008835 locus=Lus10008835.g ID=Lus10008835.BGIv1.0 annot-version=v1.0 ATGGGAGGTTCTACGGAGACGAAGTTCCTGCAGGAACTGGTCCTGTACGCGGCCAGCGCCGCCTTGAGCTGCCTTGTTCTCTTCGCTGGCCTCCGCCATC TGGACCCGAATAAGGATGCCGCCAAGAAGGCTCTTGAGCACAAGAAGGAAATTTCCAAGCGATTGGGTCGTCCTCTCATTAATACCAACCCTTACGAGGA TGTTATAGCTTGTGACGTGATAAATCCTGATCACATTGATGTAGAATTCAATTCCATTGGCGGTTTAGAAACCATCAAACAGTCTTTATATGAACTTGTC ATTCTCCCTCTTAGGAGGCCAGAACTTTTCTCTCGTGGGAAGCTTCTGGGCTCTCAAAAGGGGGTCCTGTTATATGGACCTCCAGGTACAGGAAAGACCA TGCTTGCCAAAGCTATTGCAAAAGAATCTGGAGCTGTTTTCATCAACGTCAGGATCTCGAATCTGATGAGCAAGTGGTTTGGTGATGCCCAAAAGCTTGT TGCTGCTGTATTTAGCCTTGCTTACAAACTCCAGCCAGCAATTATATTTATCGATGAGGTCGACAGTTTTCTGGGTCAGCGTCGCTCTACAGATCATGAA GCATTAACAAATATGAAGACAGAGTTCATGGCTTTGTGGGATGGTTTTACAACAGATCAGAATGCAAGAGTGATGGTGCTTGCTGCAACTAATCGTCCTT CTGAACTTGACGAGGCAATTCTTCGCAGACTTCCACAAGCCTTTGAGATTGGAATTCCTGATAGGAGGGAGAGGGCTGCAATCTTGAAGGTGATTTTGAA GGATGAGAGTGTTGAAGACAACATCGACTTCAACCATATAGCAGCTCTTTGCGAGGGCTATACAGGCTCAGATCTTTTTGACCTCTGCAAGAGTGCTGCT TATTTTGCTATAAGGGACCTGCTATCAGAGGAGAAGAAAGGGAAGCGACGCGATGGACCACGTCCGATGTCTCAGGCAGACCTGGAGAGGGTTCTGAGCA CATCGAAAAAGACAGCAGTTGCCGCAAATGAATACACAAGGTCACTGTCTCAGTCTGTTGAGTGGGTTGGGCAATCGGACGATGATCCGGTTCATGCTAC GATAAATCATCTGTCGAAGCTTGTAGTTTCCCAAATCTTGAATCTTCAACTAGCAGATTCTTCTAGGGACGAGGTGGTGGAAGAGGAGGAGTGA
AA sequence Show only first row Show all	>Lus10008835 pacid=23169159 polypeptide=Lus10008835 locus=Lus10008835.g ID=Lus10008835.BGIv1.0 annot-version=v1.0 MGGSTETKFLQELVLYAASAALSCLVLFAGLRHLDPNKDAAKKALEHKKEISKRLGRPLINTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQSLYELV ILPLRRPELFSRGKLLGSQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRSTDHE ALTNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDRRERAAILKVILKDESVEDNIDFNHIAALCEGYTGSDLFDLCKSAA YFAIRDLLSEEKKGKRRDGPRPMSQADLERVLSTSKKTAVAANEYTRSLSQSVEWVGQSDDDPVHATINHLSKLVVSQILNLQLADSSRDEVVEEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27680			P-loop containing nucleoside t...		Lus10008835 [exp]	0	1
AT3G30775		PDH1, PRODH, PR...	proline dehydrogenase 1, EARLY...		Lus10005114 [exp]	1.0	0.8689
AT4G39740		HCC2	homologue of copper chaperone ...		Lus10016805 [exp]	3.9	0.8267
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009019 [exp]	4.0	0.8598
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	5.3	0.8673
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10009655 [exp]	6.5	0.8431
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	7.7	0.8432
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	10.2	0.8642
AT3G62000			S-adenosyl-L-methionine-depend...		Lus10010276 [exp]	11.1	0.7893
AT3G26350			unknown protein		Lus10011406 [exp]	11.5	0.8243
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	11.6	0.8496

Compare expression of checked genes

Lus10008835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.