Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63850 63 / 3e-12 AAP4 amino acid permease 4 (.1) AT1G44100 62 / 5e-12 AAP5 amino acid permease 5 (.1) AT5G09220 61 / 1e-11 AAP2 amino acid permease 2 (.1) AT1G77380 61 / 2e-11 AAP3, ATAAP3 amino acid permease 3 (.1) AT5G23810 59 / 5e-11 AAP7 amino acid permease 7 (.1.2) AT1G10010 58 / 2e-10 AAP8, ATAAP8 amino acid permease 8 (.1) AT5G49630 57 / 3e-10 AAP6 amino acid permease 6 (.1) AT1G58360 54 / 5e-09 NAT2, AAP1 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008352 [exp] 161 / 6e-47 AT5G23810 379 / 6e-125 amino acid permease 7 (.1.2) Lus10027130 [exp] 71 / 7e-15 AT5G23810 509 / 1e-178 amino acid permease 7 (.1.2) Lus10010580 [exp] 67 / 1e-13 AT5G23810 547 / 0.0 amino acid permease 7 (.1.2) Lus10042741 [exp] 64 / 1e-12 AT1G77380 515 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 64 / 2e-12 AT1G44100 688 / 0.0 amino acid permease 5 (.1) Lus10037150 [exp] 64 / 2e-12 AT1G77380 680 / 0.0 amino acid permease 3 (.1) Lus10029707 [exp] 64 / 2e-12 AT1G77380 759 / 0.0 amino acid permease 3 (.1) Lus10033759 [exp] 63 / 3e-12 AT1G58360 533 / 0.0 NEUTRAL AMINO ACID TRANSPORTER 2, amino acid permease 1 (.1) Lus10012444 [exp] 63 / 3e-12 AT1G10010 535 / 0.0 amino acid permease 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G167532 [exp] 73 / 1e-15 AT5G23810 396 / 1e-132 amino acid permease 7 (.1.2) Potri.011G167000 [exp] 67 / 1e-13 AT5G23810 573 / 0.0 amino acid permease 7 (.1.2) Potri.001G470000 [exp] 66 / 2e-13 AT5G23810 570 / 0.0 amino acid permease 7 (.1.2) Potri.013G103500 [exp] 64 / 2e-12 AT5G09220 427 / 1e-145 amino acid permease 2 (.1) Potri.002G079700 [exp] 62 / 5e-12 AT1G77380 756 / 0.0 amino acid permease 3 (.1) Potri.002G080066 [exp] 61 / 1e-11 AT1G77380 751 / 0.0 amino acid permease 3 (.1) Potri.005G181500 [exp] 61 / 1e-11 AT1G77380 728 / 0.0 amino acid permease 3 (.1) Potri.002G112100 [exp] 61 / 1e-11 AT5G49630 691 / 0.0 amino acid permease 6 (.1) Potri.007G100100 [exp] 61 / 1e-11 AT5G09220 768 / 0.0 amino acid permease 2 (.1) Potri.002G079500 [exp] 61 / 2e-11 AT1G77380 766 / 0.0 amino acid permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10008844 pacid=23169175 polypeptide=Lus10008844 locus=Lus10008844.g ID=Lus10008844.BGIv1.0 annot-version=v1.0 ATGGGGACTAGAAAAGATAAGGAATCAATCGCAACTGAATACGACGAAAAAACAGTCACATTTCTCCAAAACCAACACTCTTCCACCTACTCCTCTTCTT CTTCTTGCATGAAGGACGACGAAGCTTACCCCGGCAGCGGTGGAGTATTAGTAAACAGGAGCGGCACGGTATGGACGGCGGCGCACATAATAACTACCGT AATCGGATCGGGAATCCTCTCGCTGAAATGGAGCATGGCTCAGTTAGGTTGGTTTGTCGGACCTGCCGCGATGCTTCTATTCGCCGCCGTTACTCTGTTC TTGGCTTTACTTCTCTGCGATTTCTACCGATCTCTTCACCCCTTGCTCGGCCCCGTCTTCTCGTTTATTTGCGTTAAAAGTGGAAATTGGAAGAGAGAGG AAGTGCTGCAGACTTGCAGTTGGTGGGTGTCATTATGA
AA sequence Show only first row Show all	>Lus10008844 pacid=23169175 polypeptide=Lus10008844 locus=Lus10008844.g ID=Lus10008844.BGIv1.0 annot-version=v1.0 MGTRKDKESIATEYDEKTVTFLQNQHSSTYSSSSSCMKDDEAYPGSGGVLVNRSGTVWTAAHIITTVIGSGILSLKWSMAQLGWFVGPAAMLLFAAVTLF LALLLCDFYRSLHPLLGPVFSFICVKSGNWKREEVLQTCSWWVSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44100		AAP5	amino acid permease 5 (.1)		Lus10008844 [exp]	0	1
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025597 [exp]	6.9	0.7441
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	12.4	0.7172
					Lus10037868 [exp]	14.7	0.7083
AT5G36930			Disease resistance protein (TI...		Lus10007830 [exp]	17.9	0.6091
					Lus10038051 [exp]	18.1	0.7040
AT5G01660			unknown protein		Lus10040599 [exp]	20.2	0.7040
					Lus10029261 [exp]	22.2	0.7040
AT5G56990			unknown protein		Lus10029528 [exp]	24.0	0.7040
					Lus10003825 [exp]	25.6	0.7040
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	27.2	0.7040

Compare expression of checked genes

Lus10008844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.