Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54320 270 / 2e-85 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G57390 227 / 1e-67 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT4G37750 226 / 2e-67 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 222 / 2e-67 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G79700 217 / 1e-66 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT1G51190 223 / 4e-66 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 223 / 5e-66 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 222 / 1e-65 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT1G16060 207 / 2e-62 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT5G65510 194 / 6e-56 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028880 [exp] 554 / 0 AT3G54320 298 / 1e-96 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10036719 [exp] 254 / 3e-79 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 254 / 4e-79 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030792 [exp] 252 / 2e-78 AT3G54320 280 / 6e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 246 / 3e-78 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10024101 [exp] 244 / 2e-76 AT1G16060 308 / 1e-103 ARIA-interacting double AP2 domain protein (.1.2) Lus10001553 [exp] 243 / 6e-76 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10041618 [exp] 243 / 7e-76 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2) Lus10037670 [exp] 231 / 2e-71 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G247200 [exp] 273 / 4e-87 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 265 / 1e-84 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.017G078600 [exp] 257 / 5e-81 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G092800 [exp] 256 / 3e-80 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G185300 [exp] 248 / 4e-78 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.018G102200 [exp] 231 / 2e-71 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.001G041500 [exp] 231 / 3e-71 AT1G16060 279 / 1e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.006G167700 [exp] 228 / 4e-68 AT5G57390 432 / 2e-146 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) Potri.002G114800 [exp] 229 / 9e-68 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 226 / 1e-67 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10008939 pacid=23175158 polypeptide=Lus10008939 locus=Lus10008939.g ID=Lus10008939.BGIv1.0 annot-version=v1.0 ATGAAATCGCCGCCGTCAAACGACAAGTCGACGACGAAGAACAACAAGAGGCAAAGGAAGATAATATCTCCTTCTTCATCTTCCTCATCCCTTTCTTCCC TCACTTCTAATTCCTCCTGCTCTTCCAATTCTTCCAACAATTCCTCTCCCCCATCTCCTTCTTGCTCCTGCTCTTCCTCCCCTTGCTCTTCCTGCGATCC CTCCGCTGTAATTGTTCACCCTCCTCCTCCTCCGCCGAATCATGAGGAGAAACCAGCTGCTCCACCCAAAGCCGCCAAACGACGGAGAAGAACCCAATCA TCCAAGAAATTGACCAGCAACAACAATGGCGGCGATCACCCCCCTAAATCAAACGATGAAGACAAGATTGATGATCCCCTGCCTCCCCCCTCTGCACAAG GAAAACGAAGCTCTGCTTTCAGGGGTGTCACCAGGCATAGATGGACTGGAAGATTTGAAGCTCATCTGTGGGATAAAAGCTCCTGGAACAACATGCACAA CAAGAAGGGTAGACAAGGGGCGTATGACGAAGAGGAAGCCGCTGCTCGGACTTACGACCTTGCTGCGTTGAAGTACTGGGGATCCGCCACCACCTTGAAT TTCCCTGTAGAAGGGTACGAGAAGGAGATGGAGGAGATGAGTAAAGTGAGCAGAGAAGAGTACTTGGCTTCTCTCCGGCGCCGGAGCTCCGGCTTCTCCA GAGGCGTCTCTAAGTACCGCGGCGTCGCCAGGCATCACCATAATGGACGGTGGGAAGCAAGGATTGGAAGAGTGCTGGGGAACAAGTACCTCTACCTCGG CACTTTCAACACGCAGGAGGAGGCTGCAGAGGCGTATGACATGGCGGCACTAGAATACAGAGGAGCCAACGCTGTCACCAACTTCGACGTGGCCAATTAC GTGGACCGCCTCAAGTCGAAAGGCGACCAATTCCTCCAGCCAATTTCTGACGTGGCAGTGGCTGAGGTGGCACCGGAAGATGATCAAGAAGCAGCTGAAC TATACATCAACGACAATGCTGCCAAGTTAGAACCACTTCCCCTGCCCTCATCGTCATCGTCGATCGAACAAGAGGCCGCTGAGGTGGCAATGATGATGGA TATGCCTCTGCCACCGGAGATGCCTCCCACCACGACGACAACGACAAACAACGGTGGCAGCATGATGGAGCTTCTGGAGTTGGAGAATGATGGGAATTGG AGCTTCTGTTTCGAGTACCCGGAGGAGAACAACGCGGCCTCCTCGCAGCTGGCGTCGGAGGAGGGGTGCTGTATATTGCCGGAGTTGTTCGACGTGGATG GGGGAGGGTTCCAGCTGGAGGACATTGACTATTTGGTGTTTGACTCGTACCCGCCGCCGGTGGCGGTGGATGATGATGACGCGGGGAAGAGGGTGAAGGG GAAGTTGTTGTCCGAGGAGGATCTGTCGAGGTCTCCTTCTTGTTCAACAACAACATCGGTTTCTTGTAACTAA
AA sequence Show only first row Show all	>Lus10008939 pacid=23175158 polypeptide=Lus10008939 locus=Lus10008939.g ID=Lus10008939.BGIv1.0 annot-version=v1.0 MKSPPSNDKSTTKNNKRQRKIISPSSSSSSLSSLTSNSSCSSNSSNNSSPPSPSCSCSSSPCSSCDPSAVIVHPPPPPPNHEEKPAAPPKAAKRRRRTQS SKKLTSNNNGGDHPPKSNDEDKIDDPLPPPSAQGKRSSAFRGVTRHRWTGRFEAHLWDKSSWNNMHNKKGRQGAYDEEEAAARTYDLAALKYWGSATTLN FPVEGYEKEMEEMSKVSREEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVLGNKYLYLGTFNTQEEAAEAYDMAALEYRGANAVTNFDVANY VDRLKSKGDQFLQPISDVAVAEVAPEDDQEAAELYINDNAAKLEPLPLPSSSSSIEQEAAEVAMMMDMPLPPEMPPTTTTTTNNGGSMMELLELENDGNW SFCFEYPEENNAASSQLASEEGCCILPELFDVDGGGFQLEDIDYLVFDSYPPPVAVDDDDAGKRVKGKLLSEEDLSRSPSCSTTTSVSCN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10008939 [exp]	0	1
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10036827 [exp]	1.0	0.8055
AT4G37420			Domain of unknown function (DU...		Lus10012255 [exp]	3.2	0.7133
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019192 [exp]	4.9	0.7446
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019191 [exp]	5.7	0.7629
AT5G35740			Carbohydrate-binding X8 domain...		Lus10001740 [exp]	7.3	0.6996
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	13.0	0.7154
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	17.9	0.6899
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Lus10003034 [exp]	19.4	0.7025
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	20.2	0.6917
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	24.2	0.6875

Compare expression of checked genes

Lus10008939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.