Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 326 / 3e-92 transmembrane receptors;ATP binding (.1.2) AT5G36930 323 / 3e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 310 / 9e-87 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G49140 267 / 4e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 265 / 7e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 263 / 1e-72 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 262 / 2e-71 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G58120 254 / 1e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G56540 254 / 3e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16920 251 / 1e-67 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038533 [exp] 762 / 0 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10024886 [exp] 694 / 0 AT5G36930 370 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 638 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 625 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 624 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10038482 [exp] 619 / 0 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001375 [exp] 609 / 0 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 606 / 0 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10037406 [exp] 605 / 0 AT5G36930 395 / 5e-116 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002066 [exp] 392 / 8e-117 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 376 / 3e-116 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 390 / 4e-116 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 388 / 2e-115 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 382 / 4e-114 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 384 / 6e-114 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 384 / 1e-113 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 382 / 2e-113 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 375 / 2e-112 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 375 / 2e-110 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10009005 pacid=23173365 polypeptide=Lus10009005 locus=Lus10009005.g ID=Lus10009005.BGIv1.0 annot-version=v1.0 ATGTCTCCTCCTCCGACTTGGTCTAGTGTTTGCACAGTCGCCGCCGCGTCTGTGCTGATTTTTTTTTTGGTTGACAAAGCTGTGCTTCTCCTTGCAACTG CAGCCTTTGCTCTCTATCTTATGTATAAGATACCTGACAGCTCCGGCTCTCCTTCTTATTCTTCTTCTTCTGATGATGATGATGTTGGTGACGGTGACGG TGCGGATTTTAAGCCCATTCCCGCAGGGGAATATGAGGTCTTCCTCAGCTTCAGAGGCCCAGACGTCCGTAGAGATTTCGCCGACTTTCTCAACGCATAT CTGGAGCTTGCCAATATCCGTACCTTCCTCGATGACAAAGACATCGTCAAGGGAGAAGAAATTGAGGGATCTCTTTACAAGGCTATCGAAGATTCGAAGG TGTACATCCCGATCCTTTCTCCTGGCTATGCGTCTAGCAAATGGTGTCTTCGAGAGCTATCTCACATGGTGAAATATTGCAAGCAAGGGAAGGGCAACCT CATATTTCCGATTTTCTATATGATGAATCCTAGAGATGTAAGGCACCATAGCGGTGATTACACGGAAGCATTTGTACAGCACAGTGAGAGATATGATGCT GAAACGGTCAAGGCATGGAAGGAAGCTCTAACAACGGTCGGGAAATTGAAGGGATGGACCGTTACCAAGTTTGATCGACAGGGAGTCGTAGCAAAGGAAG TGTTTGCCCGCGTAAAGTCGCATCTGATGAGTAGTTACGTTTTAGTGACTGAGCAATTGGTGGACATTAATCATGATGTAGGCGAAGTGATTGACCGAAT GAACAAAGATGTCAAGGTTGTTGGCATCGTTGGTATGGGTGGTCTTGGTAAGACCACCATTGCTAAGGCTGTTCGAGACAAAGTGCATATGGAATTTGAT TATTGCTTCTTCTTGAGTGATGTTCGACAGACATTGACAGAGAGCGGAGGCATTTTGACTTTGCAGAGGCAAATCATGACTGCGATTCCAGGATATGATG GAAATGTTCACAATCCGAGTCAAGGAGTCGGCCTCATTAGAGACAGGGTTCACAAGAAAAAATGTCTCTTCATAATTGACGATGTCGATGAAGGATTCGA GTTTGAACAAATATTGGGGAAGCTTGAGGATTTTTCCTCGGGAAGTCGATTTATCATTACGACAAGGAACAGAGGAGTTCTGGAGGAAACCGAGGTTTAC GAACCAAAGGGTTTGGATAGTGATCATTCACTTCAACTTTTTAGTAGACATGCTTTTCGGTTGGATGGTCCTCCGGAAGACCGTGTAGCTCTATCCAAAG AGTTCGTAAAAGTTGCCGCAGGTCTCCCATTAGCGCTTAAAGTCATAGGGTCAACATTGCGTGGAAAAAATGAAGGGTTTTGGAAAGAAAAGTTGATGCA ATTGAAAGATCAAATGCCTGATGATATGTTACGAGAGACGTTGATGATAAGTTATTCGGACTTGAAAATCAAGGAACAAAAGATTTTCCTCGATATTGCT TCTGTTTTCATTGGAGTAAGCAAGGAGCTGCCTTTCTATATGTGGAGGGATTGTGGGTTTTATCCTGAAATTGGAATAGATGCCCTTATCTTTAAGTCGT TGATTAAAGTGACCGAAGACAATGTTTTTTGGATGCATGATTGTACTAGAGATCTCGGCAGAAGCATTATTTACGAGGAAGATCCTCAATGTCCATGGAA GCGCAGCAGGATATGGTCTAACAAAGAGGCAGTGAAGATGATAAGAAATGGAGAGGGAACCGATCAATTGGAAGTTCTGAAAGTGAACATGATAAATAAT GACTTGGTGTTATCCGATAGACAATTTGAAAGATTGTCAAGATTAAGATATCTTGAAGTGTCTTACGGAGAATTGAAGGGGAATTTTGAGAGAGTTCTTC CAAATTTATGTTGGCTTGCACTGGATAATTGCTCCTTGATGCACAATGATACCAATATGAAGAAATCAATAGTTTTCATTCAAAGGATATCAGACAATTC AAACGTAGTACATGACTCCAATGGTTGGGAAAATCTAAAGGAGGCACACAATTTGAAAGCTATAGATTTATGGAATTGTAATGGGCTAGGAAAGGTCCCT AGCTTGTCTCATGAAGTTCCTGAGTCGTTGGTGTTTAATATTAGTCTAGAAGACTTGAAGGACAGACTAGAGTTAGACTCTGGAGGTGTGAAAGCGATAG CCATCTGGGGCATGGGCGGTATTGGCAAGACCACCATAGCTAGAGCTCTATACAATGAAATTTGTAGAGAATTTGATGGTTGTTGCTTCCTAGAAAATGT ACAAGAAACTCTTGAAGAGACGGATGGTATGGTGAGGTTGCAGAGGAAAATCATTCACAGCATTCTACAAAGCGACTGCTGCAAGGTTGAAGATGTCTAT GACGGAATCAACATAATAAAAACCAGGATGTCCAAGATGAAGCTTCTTATCGTTCTAGATGAATTGAATTATGGGCTTCAAGAAATTTTGGGGGATTTGG AAGATTTTCACTCGGGTAGCAGATTTATTATTTCTACGAGATTCATGAGAGTTGTGCAGCGATCAGATATGTCGTTATCTCAAGGATGCATGGTGTACCA ACTAAAATTGATGAATGTAGATGACTCTCTTCGACTTTTCAGTAGACATGCATTTGGAGCTGATTCTCCGCCGGAGGAGGATGTTGACTTGTCAATGGAG TTTGTAAGTGTTCTTAGAGGCCACCCTCTCAGTGTAAGAGTCATAGGATCTCTCTTGTTTTGCAGAGATAAGAGGTTCTGGGAAGATACGTTGGCACGGA TATGTAGCATGCCCGATTCTGATGATTCTGATGTGCTAGATATATTGATGGTCTGTTATCATGAGCTGTCTCACAAGCAACAACAAATATTCCTGGACAT TGCTTGCTTCTTTCACGGAGCAGATAAAGCACAACCTTCCTTGATGTGGGATAGTTGCGGTCTTCATCCAGAAAGTGCAGTTGCCGCCCTCATTCAGAGA TCTTTGATAGAAGTCAAGCAATCAGATGACAGACAGGAGTTCTGGATGCATTCGCTTCTAAGAGATATGGGCATGGCAATTGTTCACAAAGAAGATCGTA ATTCTCCGTGGAGCCGTAGCAGGATATGGTCGAACAATGACGCAGTCCACATGTTAACTCATGAAATGGGAACTGATCGAGTGAAACGTATTCGAGTTGA GATTAAAGAAAAAAATATGAGATTGACGGATAGGCACTTTGAGAAGTTGTCAGAATTAGAGTATCTTGAAGTGGACGGCGGAGAATTCAAGGGCGATTTT GAGCGTACTCTTCCAGAGATACGATGGCTTAAATTGCGTAATTGCGGCTCGAACCCCATTGATTGTGATATGAAGAAACTAGTGATTTTTCATATGCAAG GTAGCAGCGTCAGAGATGATTGGAGAGGCTGGCAAAATTTAAGGGCGGCGCGCAACCTGAAATCAATACGTCTTCATCAGTGCAATCACTTAGAAATGGT TCCAGACTTGTCTCGATGTGCAAATCTTGAATCAATATTTCTTCATCAGTGCACTCACTTGGAAATGGTTCCAGACTTGTCTGGATGTGAAAATATTGAA TCAGTAGATATTCAACAGTGTACCAAGATGAAAGGGGAGCTCCAGATCAGTCATTTGAAACATCTCAAAGTGTTGAAGATCGTGGACACCAATATAACGA AAATAACAGGTAACATTGTAATGCTTTCGAATCTACAGGAGATTACCCTCCCTCGTAAACTCGTATATTTCACATAG
AA sequence Show only first row Show all	>Lus10009005 pacid=23173365 polypeptide=Lus10009005 locus=Lus10009005.g ID=Lus10009005.BGIv1.0 annot-version=v1.0 MSPPPTWSSVCTVAAASVLIFFLVDKAVLLLATAAFALYLMYKIPDSSGSPSYSSSSDDDDVGDGDGADFKPIPAGEYEVFLSFRGPDVRRDFADFLNAY LELANIRTFLDDKDIVKGEEIEGSLYKAIEDSKVYIPILSPGYASSKWCLRELSHMVKYCKQGKGNLIFPIFYMMNPRDVRHHSGDYTEAFVQHSERYDA ETVKAWKEALTTVGKLKGWTVTKFDRQGVVAKEVFARVKSHLMSSYVLVTEQLVDINHDVGEVIDRMNKDVKVVGIVGMGGLGKTTIAKAVRDKVHMEFD YCFFLSDVRQTLTESGGILTLQRQIMTAIPGYDGNVHNPSQGVGLIRDRVHKKKCLFIIDDVDEGFEFEQILGKLEDFSSGSRFIITTRNRGVLEETEVY EPKGLDSDHSLQLFSRHAFRLDGPPEDRVALSKEFVKVAAGLPLALKVIGSTLRGKNEGFWKEKLMQLKDQMPDDMLRETLMISYSDLKIKEQKIFLDIA SVFIGVSKELPFYMWRDCGFYPEIGIDALIFKSLIKVTEDNVFWMHDCTRDLGRSIIYEEDPQCPWKRSRIWSNKEAVKMIRNGEGTDQLEVLKVNMINN DLVLSDRQFERLSRLRYLEVSYGELKGNFERVLPNLCWLALDNCSLMHNDTNMKKSIVFIQRISDNSNVVHDSNGWENLKEAHNLKAIDLWNCNGLGKVP SLSHEVPESLVFNISLEDLKDRLELDSGGVKAIAIWGMGGIGKTTIARALYNEICREFDGCCFLENVQETLEETDGMVRLQRKIIHSILQSDCCKVEDVY DGINIIKTRMSKMKLLIVLDELNYGLQEILGDLEDFHSGSRFIISTRFMRVVQRSDMSLSQGCMVYQLKLMNVDDSLRLFSRHAFGADSPPEEDVDLSME FVSVLRGHPLSVRVIGSLLFCRDKRFWEDTLARICSMPDSDDSDVLDILMVCYHELSHKQQQIFLDIACFFHGADKAQPSLMWDSCGLHPESAVAALIQR SLIEVKQSDDRQEFWMHSLLRDMGMAIVHKEDRNSPWSRSRIWSNNDAVHMLTHEMGTDRVKRIRVEIKEKNMRLTDRHFEKLSELEYLEVDGGEFKGDF ERTLPEIRWLKLRNCGSNPIDCDMKKLVIFHMQGSSVRDDWRGWQNLRAARNLKSIRLHQCNHLEMVPDLSRCANLESIFLHQCTHLEMVPDLSGCENIE SVDIQQCTKMKGELQISHLKHLKVLKIVDTNITKITGNIVMLSNLQEITLPRKLVYFT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25510			disease resistance protein (TI...		Lus10009005 [exp]	0	1
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10022746 [exp]	1.0	0.7728
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	29.3	0.7476
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019610 [exp]	31.7	0.6600
AT1G11060			WAPL (Wings apart-like protein...		Lus10018478 [exp]	36.2	0.7410
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	37.9	0.7273
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	38.1	0.7422
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	44.9	0.7389
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10010527 [exp]	69.1	0.7026
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10003447 [exp]	77.5	0.6861
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	79.1	0.7001

Compare expression of checked genes

Lus10009005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.