Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18100 423 / 2e-137 MYB ATMYB4R1 myb domain protein 4r1 (.1.2.3) AT5G11510 130 / 9e-31 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT3G09370 125 / 7e-30 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT4G32730 123 / 1e-28 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G02320 118 / 1e-27 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT4G00540 106 / 3e-24 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT1G17950 95 / 2e-21 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT5G17800 94 / 1e-20 MYB ATMYB56 myb domain protein 56 (.1) AT1G73410 91 / 3e-20 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT3G29020 90 / 8e-20 MYB ATMYB110 myb domain protein 110 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009636 [exp] 1172 / 0 AT3G18100 491 / 4e-160 myb domain protein 4r1 (.1.2.3) Lus10011687 [exp] 127 / 1e-29 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 127 / 1e-29 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10008010 [exp] 122 / 4e-29 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10025351 [exp] 117 / 3e-27 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 115 / 8e-27 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10038623 [exp] 106 / 4e-23 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10031900 [exp] 94 / 2e-20 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 94 / 2e-20 AT1G17950 219 / 3e-70 myb domain protein 52 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041500 [exp] 476 / 7e-151 AT3G18100 627 / 0.0 myb domain protein 4r1 (.1.2.3) Potri.006G241700 [exp] 125 / 3e-29 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 123 / 2e-28 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.003G123800 [exp] 119 / 2e-28 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.006G085600 [exp] 116 / 7e-27 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.014G079300 [exp] 112 / 2e-25 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.008G088000 [exp] 98 / 2e-21 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.010G167500 [exp] 97 / 7e-21 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.012G039400 [exp] 92 / 2e-20 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.017G085200 [exp] 95 / 3e-20 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009008 pacid=23173357 polypeptide=Lus10009008 locus=Lus10009008.g ID=Lus10009008.BGIv1.0 annot-version=v1.0 ATGCGGACTCCGGAGGCGGAAAACTGGGGAAGGCTCTCCGACCTAACCAGCGACGATGAAGACGACCTCGACGATGCATTGTTCAATGACATTGAAGCTC TCAGGGAAGTATGCTTGAAAACCGGCAACACTCTCGGCAACACAGACAACGTCTGCGACGACGACGAGGATAACGACGATGGTCCTTCCACTTCCGGGCG GGTAGTCGATTCCGATAGCGATGAAGACGATTTGGAAATTCTACGGAGCATTCAGCAGCGGTTTATGAAATCGGGTAAGAATTACCAGGCTCTCTCGCCC AAGCCTCTGTGCTCGATCCATCCAGATACGGACGATGACGACGGAGAGGATGATCTAGAGATGTTGGTCTCTCTTCAGAGGCGTTTCGGGACGAAGGGTG GTATTGATGCAAATGGAGGGGAAATTCGGAGTAAGAGATTCGAAGAGGAGCAGACTTCAATTGTCACTTCAGAGGTGAAAGTTTCTGACGAACAATTGGT GGGTAAAACTAATGCTTTTCGAGTGGTTGAGGATATTCAAGACACTGCTAATAACACCGCCAATTTGTTGAGTGAAAGAAACCTGAAGGATCTTCAGGTT TCATGCAGGCAAAATACTGGTCGTAGTTTTGCCCAGGGGAAGAATCCTCGAATCCAGTTGATATCAGCACAATCTAGCATCAGCTCCAAGGATGCCAAGG GTAAGGATGTAAAGTTGTCTCCGATATGCAGTGGCCCAGAGGAGAATTCTCACGTTCCTAACTATAGGGAAGCGTTGGTGAAATTCCCCCCATCATTGGA ACGAAGAAAATGGGAAAAGTCTGAAGATAAAAATCTGAAGGAGGGGTTAAAGCAGCAATTCCAAGAAATACTGTTTATGGAAGCTACGGACCAATTCAGT TCTTCAGGACATGATGGTGACACAGATAGCATTATTAAGTCTGTCGAAAATCTGGAGATTACACCTGAGATAATGAAAAAATTTCTGCACAAGGTTGATT GGAATATGGTTGCTTCCAGGTTCGTGAAGGGTCGCTCAAGTCCAGAATGTCAAGCACGGTGGTTAAATTCGGCATGCCCAGATATCAATAACAGTGGATG GGCTAGACAAGAGGAGAAGCTTCTATTGTATTACGTTCAGAGCAAGGGGATTCACAATTGGTCTGAGATTGCTTCGTTGTTAGGGAAGAAAAGAACTCCG TTTCAGTGCTTGGAACGTTACCAAAGGAGCTTGAACTCTCGTGTTCTGAACAAGGAGTGGACAAAGGAAGAAGACGCCCAACTTAAGTCTGCTGTTTGTA AATTCGGTGAGAGTGACTGGCAGTCTGTGGCCACAACTCTCAGAGGACGAACTGGTGCTCAGTGCTCTAACAGGTGGCTGAAAAGTCTCCGCCTATGTGG TAAAGGGAATTGGAAAGCAGAAGAAGATAAACGCTTGAAATTGGCTGTGAAGTTTTTTGGTCCCAAGGATTGGAAGAAAGTTGCTTCATTCGTGCCTGGC CGGAAAGATGTACAATGTCGCGAGAGATGGCATAATGCTTGCTCTCCTTCCCTGAATCGTGGTGCATGGACCGACGAAGAAGATTCACGATTGAAGGCAG CAGTTGAAGAACATGGTCATAGTTGGTCTAAAGTTTCTCATTACGTTCCTGGTAGAAACGATAACGATTGTATGAGGAGGTGGAAGGTCTTATTCCCTAA GGAAGTGAAATTGCTTAAAGAAGCCAGAAAATTTCGGAACGCTGCCCTTATAACCAACTTTGTCGACCGTGAGGAAGAGCGCCCAGCACTTGGTTTAGAA GATTTCGTTACGTCGCCCAGGTTGTTACCTGAATCTGAAAACGTGGATCAGTCTGGAAAATCGGGAAGGAAACGAAGCAATGCCAGAACAAAGACTAGAC CGAACAGGACAGTTAAACAAATGCAGGAGTCTTTGCAGGCTGGCGGCAATGGTACTGCTGATGCAGGAGATGCTGAAAGCTGCGGCGGAAGTACTGCTGC TGGAAGGAAGAGAAGAACTCTGAATCGTCGACGAAGAACGAGGAAGGATCATGCTCAGCCACCTCGGGAACCGTCACCTGATTCTATCTGCTCTCCGTCG AGGACAAAGAAAGTATTGCTGGTCTACACTAGGAGGAAAAAGGGGCTCGATCTGAAGAACCGAGAAGCAAATAGCAGTTCCGAGAAAGATGTCGAGGCAC CATCATCCTTTAATGAAGTTTACACGAAAGGGTTCGGGGCTCTTAGACCGCATCACAGACACGAAAAGGATTCACATGACGTGCAAGAACCCTGGGATAA CATTACGCTTTCTTCCTTACGTACATCGAAGAAGAGGAAGAGGAAGCTCAAAATTGACGATCGTAGTAATATCGTCGTTAAGGACATTGGCAAGGCTAGT TATCCTCCCGATGATGCTCAAGCCACCTCTGATTCAGAAGCCACCTTCTCTGCCGAATTGCAATGCCGAGAGACATCTAGCCACATGTCAATCGACAGCA GCAGAAGTCCTCCCGGTTCGAATTCGGTTTATTCAAGGAAGCGTAAGAAGATTCATGGGCAGGCGCCAGTGAATCAGAAACATGACGACAGTAAGATCGA CAATGCTGGCATTCTTCGAGCAACATCGCTTGATGCGTGTGAATCTGATGTGACCAGTTAG
AA sequence Show only first row Show all	>Lus10009008 pacid=23173357 polypeptide=Lus10009008 locus=Lus10009008.g ID=Lus10009008.BGIv1.0 annot-version=v1.0 MRTPEAENWGRLSDLTSDDEDDLDDALFNDIEALREVCLKTGNTLGNTDNVCDDDEDNDDGPSTSGRVVDSDSDEDDLEILRSIQQRFMKSGKNYQALSP KPLCSIHPDTDDDDGEDDLEMLVSLQRRFGTKGGIDANGGEIRSKRFEEEQTSIVTSEVKVSDEQLVGKTNAFRVVEDIQDTANNTANLLSERNLKDLQV SCRQNTGRSFAQGKNPRIQLISAQSSISSKDAKGKDVKLSPICSGPEENSHVPNYREALVKFPPSLERRKWEKSEDKNLKEGLKQQFQEILFMEATDQFS SSGHDGDTDSIIKSVENLEITPEIMKKFLHKVDWNMVASRFVKGRSSPECQARWLNSACPDINNSGWARQEEKLLLYYVQSKGIHNWSEIASLLGKKRTP FQCLERYQRSLNSRVLNKEWTKEEDAQLKSAVCKFGESDWQSVATTLRGRTGAQCSNRWLKSLRLCGKGNWKAEEDKRLKLAVKFFGPKDWKKVASFVPG RKDVQCRERWHNACSPSLNRGAWTDEEDSRLKAAVEEHGHSWSKVSHYVPGRNDNDCMRRWKVLFPKEVKLLKEARKFRNAALITNFVDREEERPALGLE DFVTSPRLLPESENVDQSGKSGRKRSNARTKTRPNRTVKQMQESLQAGGNGTADAGDAESCGGSTAAGRKRRTLNRRRRTRKDHAQPPREPSPDSICSPS RTKKVLLVYTRRKKGLDLKNREANSSSEKDVEAPSSFNEVYTKGFGALRPHHRHEKDSHDVQEPWDNITLSSLRTSKKRKRKLKIDDRSNIVVKDIGKAS YPPDDAQATSDSEATFSAELQCRETSSHMSIDSSRSPPGSNSVYSRKRKKIHGQAPVNQKHDDSKIDNAGILRATSLDACESDVTS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009008 [exp]	0	1
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	11.0	0.7334
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009636 [exp]	11.6	0.7618
AT5G24260			prolyl oligopeptidase family p...		Lus10022408 [exp]	22.0	0.7102
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Lus10039974 [exp]	31.1	0.6625
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10012209 [exp]	33.2	0.6868
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	34.5	0.6569
AT1G64310			Tetratricopeptide repeat (TPR)...		Lus10025624 [exp]	39.1	0.6981
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10003769 [exp]	51.4	0.6399
AT4G15840			BTB/POZ domain-containing prot...		Lus10002874 [exp]	56.2	0.6715
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	58.9	0.6907

Compare expression of checked genes

Lus10009008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.