Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68320 222 / 2e-72 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 210 / 1e-67 MYB ATMYB116 myb domain protein 116 (.1.2) AT1G48000 197 / 7e-63 MYB ATMYB112 myb domain protein 112 (.1) AT2G47190 197 / 2e-62 MYB AtMYB2 myb domain protein 2 (.1) AT5G49620 186 / 8e-58 MYB ATMYB78 myb domain protein 78 (.1.2) AT3G06490 186 / 1e-57 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT3G27810 182 / 2e-57 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 175 / 1e-54 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 167 / 1e-51 MYB ATMYB57 myb domain protein 57 (.1) AT4G13480 160 / 2e-48 MYB ATMYB79 myb domain protein 79 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034338 [exp] 219 / 2e-70 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10041435 [exp] 219 / 3e-70 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10037818 [exp] 203 / 6e-64 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10017096 [exp] 200 / 7e-64 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10038062 [exp] 188 / 4e-59 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10009996 [exp] 184 / 4e-57 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10022259 [exp] 182 / 5e-57 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10032129 [exp] 173 / 5e-54 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10014557 [exp] 172 / 1e-53 AT5G40350 224 / 1e-74 myb domain protein 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G046200 [exp] 229 / 3e-74 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.012G055600 [exp] 228 / 6e-74 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.008G122100 [exp] 221 / 2e-71 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.010G123000 [exp] 213 / 4e-68 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.008G101400 [exp] 203 / 2e-64 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 202 / 6e-64 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.014G117000 [exp] 180 / 1e-55 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.002G191800 [exp] 179 / 3e-55 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2) Potri.017G071500 [exp] 174 / 1e-54 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.001G346600 [exp] 171 / 2e-53 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009037 pacid=23173349 polypeptide=Lus10009037 locus=Lus10009037.g ID=Lus10009037.BGIv1.0 annot-version=v1.0 ATGAGCTGTGGGTCGTCGTCACCGTCAAGTAGCTCTGATGGCAGCGGTGGAGATAAGCTCCGGAGAGGGCCGTGGACACAGGAAGAGGACAACCTCCTCC GCCGCTACATCCATCAACACGGCGACGGCCGGTGGAACTCTCTAGCTAAACGTGCTGGGCTGAGAAGAACTGGGAAAAGCTGCAGACTAAGATGGCTGAA TTATCTCAACCCAGAAGTGAAACGAGGGAACCTCACTCCTCAAGAACAATTATTGATTCTCGATCTCCATTCGAAATGGGGCAACAGGTGGTCGAAAATC GCACAATATTTACCAGGAAGAACAGACAACGAGATAAAAAATTATTGGCGCACACGTGTCCAGAAGGAGGCGCGGAACCTCAACGTGGATCCGAACGGCG ACGTTTTCAGCGACATCATCAAGTGCTTCTTCATGCCCAGGTTGGTTGAGAAGATTGAACGTTCGTCGTCGATTCCTTCTTCTTCTGCCGTAGCCGCCGT TTCCGGCGGTAAAAGCCTAGAAACTGTTTCCGCATCCGCCACGGATTACGTTCCATTCTCCGGCGACGGTCCGTTGGAATTAATGCATCCGTCGCCGCTG CAGCCGGAGATTCAGAGTGGGGGCTGCTACGACTTGGACATTGTGTTGGGTGACGTGGACGGCGGTTTACACGTGGCAGAAGCGGATTGGGTGGGTGGTT ACGAAATGTGGGATAATATGTATGAGCTATACGACTGCTGA
AA sequence Show only first row Show all	>Lus10009037 pacid=23173349 polypeptide=Lus10009037 locus=Lus10009037.g ID=Lus10009037.BGIv1.0 annot-version=v1.0 MSCGSSSPSSSSDGSGGDKLRRGPWTQEEDNLLRRYIHQHGDGRWNSLAKRAGLRRTGKSCRLRWLNYLNPEVKRGNLTPQEQLLILDLHSKWGNRWSKI AQYLPGRTDNEIKNYWRTRVQKEARNLNVDPNGDVFSDIIKCFFMPRLVEKIERSSSIPSSSAVAAVSGGKSLETVSASATDYVPFSGDGPLELMHPSPL QPEIQSGGCYDLDIVLGDVDGGLHVAEADWVGGYEMWDNMYELYDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10009037 [exp]	0	1
AT2G41640			Glycosyltransferase family 61 ...		Lus10031057 [exp]	4.4	0.9622
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	9.9	0.9618
AT2G47710			Adenine nucleotide alpha hydro...		Lus10007043 [exp]	10.8	0.9357
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006701 [exp]	12.0	0.9605
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004858 [exp]	15.7	0.9458
AT2G19130			S-locus lectin protein kinase ...		Lus10026391 [exp]	20.0	0.9482
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	20.6	0.9212
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	24.9	0.9543
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006703 [exp]	25.9	0.9341
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	26.0	0.9488

Compare expression of checked genes

Lus10009037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.