Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 326 / 1e-93 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 324 / 5e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G51630 311 / 1e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G46260 308 / 1e-87 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 301 / 7e-85 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 298 / 8e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44480 295 / 4e-83 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 290 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44510 289 / 4e-81 TAO1 target of AVRB operation1 (.1) AT5G41550 285 / 3e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019654 [exp] 1142 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 964 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 781 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 763 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006732 [exp] 762 / 0 AT4G11170 322 / 8e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006789 [exp] 729 / 0 AT4G12010 325 / 7e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10005813 [exp] 714 / 0 AT3G44480 297 / 2e-84 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 710 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016029 [exp] 710 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 463 / 2e-144 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 454 / 3e-141 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 452 / 4e-139 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 443 / 3e-134 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 423 / 4e-129 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 424 / 1e-128 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 421 / 2e-128 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070393 [exp] 406 / 1e-120 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 405 / 1e-120 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 399 / 1e-120 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10009107 pacid=23150047 polypeptide=Lus10009107 locus=Lus10009107.g ID=Lus10009107.BGIv1.0 annot-version=v1.0 ATGGCTTCATCATCAACTGCTCCTCAATACACTGGGAAATGGGAATACGATGTCTTTGTTTGTTTCAGAGGTGACACACGCGGTACCTTTACCAGCCAGC TTGCAGGAGATCTACGCGAACGGAAAATCCGAGTCTTTACTGATGTAATGCTTGAAAGAACAGAAGACATAGGTGAGCTACTCTCCATCCTCGCCAAATC CGCAATGTCAGTCGTGATATTCTCCGAGAAGTTTGCAGAGTCGACATGGTGCCTGGATGAGGTGGCCACCATTGCCCAAAGCATGGAACAATTCGGACAT CGGGTGCTACCAGTTTTCTACCAAGTGAACCCGGATGACGTGTCGGATGATTCTGGCAGCTACTCCTCTATCATTGACACCACACATAATCCCACCTTAG AGGAGAAGATGAGATGGATGCATGCTCTGAATGCGGTGGCTAATCGTGCAGGACGTTCCTCAAATGAGATCAACGATGATTATGAATTGCGCAAGACGGT GGTGGATGATGTTTTGAAGAAACTGATGGACATGTCTTCAAGTGGGAAATTTAGCAACTTGGTTGGTATGGAGACCCGCATGATGAAGTTTCAACAACTA TTTCCTACAGAGGAATCATCAAATACTACTTGCATTATTGGTCTCTGGGGAATGGGTGGGTTAGGTAAAAGCACGCAAGCCAATTCTTGGTATCAGATTT TGACATCTCCACCTAACAGAATCAAACATCATTTTGTTTCAAATGTAAATGGAAGGTGCGATTCGCGGCGTGGAGTTGAGGAACTAGTACGAGATCTCTA TTCAAGTTTGTTGTCTGAGAACAATCTAAGTCTCAGAGATCTGGATGTTAATTATAGAAGGGAACGTCTTTCTCGCTTTAAAGTGGTTATTGTTCTCGAC AATGTAGAGACTACACAGCAATTGGAGCACCTACTTTTGGGGGAAATTCATGATCCCGCCAAACTCTTCGGTCCCGGGAGTGTGATCATTGTAACGTCGA GAAATCAAGATGTGCTTAACCATGCCAATGCAGAAGTCCACACAGTTGAAGGTTTGGATTCCTCCGAGTCTCTTCAGCTCTTCAGCTTGCATGCGTTCAA ACAACTCAGTCCCTTTGATGATTTGATGGATCAGTCACGTCTGGTTGTATCGTATTGCAAGGGAAACCCTTTAGCCTTAAAGGTTCTAGGAGGTGCATTG TTTGGTAAGGACAATGAGTATTGGGGGAGTTTCATTTCGGGATTGGCAAATATGTCAAAGCCGGAAATCCATGATGTTCTTAGTACAAGCTACTATGCAC TGAAAGGTGAAGAGCGAAAAGTATTTATGGATGTTGCTTGTTTCATCCGTGGAACTTCTAAAACTAAGCTGCATCGTGTGATGATCGAGGTGCATGATTT GCTTAAAGAAATGGCTTGGAACATCGTCAACGCGGAACCAAATCCCAGCAGATTGAAGAAAACCAGTGATATCCGCAAACTTTTTTCTGTTCCGGAGGGA ACAGATGCCTTTGAGTGTATGGACTCTCTTAGACTTCTGGATGTCTTCTTCTTCCCGGTCGGGGCTGCCAGAATCGAACTACCAGATGACGGGCTTGACA CCCTCCCTAACGAGCTAAGGTGGTTGGAGTGGATTGGATTTCCTTCAAGATGCCTCCCATCAACATTTTGTCCTGAAAAACTAGTCGTACTTTCTCTACG CCATAGTAATATTGAAAGGTGCTGGGGTGGTGTTGAGCCAACGCTTGTGAATCTTATTGCGCTTAACCTCTCCTACTGCTTGAATCTCATTGTCGTCCCA AACTTGTCGGGGTGTAAGAAACTGGAGTTACTCCGTCTCAAGGGATGCAGAAGCCTAGTTCAGCTGCCGTCTCATGTTCAAGATTTGGACAAGCTGATTG AGGTGGACCTTAGTGAATGTCTTAATCTAATGCATCTTCCGGCAAAACTCAACTCGAAATGCCTGAAGTATGTTCGCTTGGCCAAATGTCCGAAGCTCAC TCTTTGTCCGGAGATTAATAATGCAGGAGATCTAGAAGTGTTGGATCTAGAGGGGACACCGGTTACGAAGCTGCCATGTGCAACACGCAAGGTCAAGAAT GGCAACCTACGTCTATGCGGAAAATGTATTACTAGCTTCCCTAGAATCTCAACAAGCTTGAAGCTACTTAGGTTGTGCCATACCACAATGGAAGAGCTGG ATGTTGATCATCATCAGCAGCAAGATGCTTTTACCTCATCTGAACTATTACCGAAATTTAATCAAGTGGAGTTAGTTGGAAACTCGCAACTCGTGGCGTT GCCAAACAGCATTTGGGATATGGTAAAAAAAGAAATTTGGATTGAGGATTGCTCGTTGATTGTGAGTCTTCCAGATATCTCGAACCGCGGGTATGGCTTA ACAGGGGTTTATGTGGTAAATTGTGGGAATCTGAAGAGTCTTCCATCTGGCATTAGCAATCTGAAACTTTTGCGGGTTATCCATTGTACAGGAACGGCTA TACAGTCCTTGCCTTCTGATATCCACTTGCTGGACAACCTCTGTGTTCTGAATCTGAGTTTCTGCGTAAGCCTGCAGTCTATCCCGGATAATATCAATGA ACTTGTGAAGCTATTCCAATTATCTTTGAAGGGCTGTGTCAAGATTCAATCTTTGCCTGAACTTCTTCCACCAAATCTAGAGGTTTTCTGTGTAAGTGGG TGCAAGTCATTACAAGCTCTACCAAGCAACACAGTGGAGCTGAATCTGTCACTCTTGCGCTTTGAAAATTGCCCGCGATTGGATTCTAAGTTGCCCGATC AGATCACAGTGGGTTTCCCCAAGTGTGCAGCAATGTCTATGCAAGCTAAGGGTAGTGTTTTATACTCGGGAAGTAGTGAGCTTCCAGAATGGTGCAGCAA CTGCAACGTGAGCTATGATATGGAGTTGCCGCCTCTAGCCCGTGACAGTAACCAGCCACATACACTAATGTTTAAAGGAATCGCATTTGGTGTTGTGTTT TCCTCAGATGCTATAGCAGTTGAGCTGAATATGAAATGCAAGGTTGAAATGGGGGGCACCGTTGTTGCTACTTTCTCCAGTCATGCCATTCGGATCTGCG GTGGGAGTGGCACCTCGTCTGATTATGTTTTTCTGTGGTTTGATAAGAAGGTATTAGGTGAAACCCAGAAAGGAACTGAAGACGAAGAAGAAGAAGAAGA AGTAATTGCAGTGCCTTGGTATGTGAGATATGCTGGACAGACTGTTTCGTTCCGAGTTTACTGTCTATCAAAAGGAGGAGAAGATGTCGAGAAAGTAAAG AACATGGAGGTCAAAAGGCTTGGCGTCTCGCTAGTCTACTGA
AA sequence Show only first row Show all	>Lus10009107 pacid=23150047 polypeptide=Lus10009107 locus=Lus10009107.g ID=Lus10009107.BGIv1.0 annot-version=v1.0 MASSSTAPQYTGKWEYDVFVCFRGDTRGTFTSQLAGDLRERKIRVFTDVMLERTEDIGELLSILAKSAMSVVIFSEKFAESTWCLDEVATIAQSMEQFGH RVLPVFYQVNPDDVSDDSGSYSSIIDTTHNPTLEEKMRWMHALNAVANRAGRSSNEINDDYELRKTVVDDVLKKLMDMSSSGKFSNLVGMETRMMKFQQL FPTEESSNTTCIIGLWGMGGLGKSTQANSWYQILTSPPNRIKHHFVSNVNGRCDSRRGVEELVRDLYSSLLSENNLSLRDLDVNYRRERLSRFKVVIVLD NVETTQQLEHLLLGEIHDPAKLFGPGSVIIVTSRNQDVLNHANAEVHTVEGLDSSESLQLFSLHAFKQLSPFDDLMDQSRLVVSYCKGNPLALKVLGGAL FGKDNEYWGSFISGLANMSKPEIHDVLSTSYYALKGEERKVFMDVACFIRGTSKTKLHRVMIEVHDLLKEMAWNIVNAEPNPSRLKKTSDIRKLFSVPEG TDAFECMDSLRLLDVFFFPVGAARIELPDDGLDTLPNELRWLEWIGFPSRCLPSTFCPEKLVVLSLRHSNIERCWGGVEPTLVNLIALNLSYCLNLIVVP NLSGCKKLELLRLKGCRSLVQLPSHVQDLDKLIEVDLSECLNLMHLPAKLNSKCLKYVRLAKCPKLTLCPEINNAGDLEVLDLEGTPVTKLPCATRKVKN GNLRLCGKCITSFPRISTSLKLLRLCHTTMEELDVDHHQQQDAFTSSELLPKFNQVELVGNSQLVALPNSIWDMVKKEIWIEDCSLIVSLPDISNRGYGL TGVYVVNCGNLKSLPSGISNLKLLRVIHCTGTAIQSLPSDIHLLDNLCVLNLSFCVSLQSIPDNINELVKLFQLSLKGCVKIQSLPELLPPNLEVFCVSG CKSLQALPSNTVELNLSLLRFENCPRLDSKLPDQITVGFPKCAAMSMQAKGSVLYSGSSELPEWCSNCNVSYDMELPPLARDSNQPHTLMFKGIAFGVVF SSDAIAVELNMKCKVEMGGTVVATFSSHAIRICGGSGTSSDYVFLWFDKKVLGETQKGTEDEEEEEEVIAVPWYVRYAGQTVSFRVYCLSKGGEDVEKVK NMEVKRLGVSLVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10009107 [exp]	0	1
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	4.4	0.7173
AT1G15110		PSS1	phosphatidylserine synthase 1,...		Lus10000366 [exp]	14.5	0.6105
AT3G23950			F-box family protein (.1)		Lus10013987 [exp]	17.2	0.6552
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10012245 [exp]	19.6	0.6570
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10039869 [exp]	32.7	0.6078
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	34.4	0.6348
AT1G49230			RING/U-box superfamily protein...		Lus10005815 [exp]	34.6	0.6205
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036140 [exp]	37.3	0.6270
AT1G03350			BSD domain-containing protein ...		Lus10034015 [exp]	44.5	0.5765
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Lus10019464 [exp]	48.2	0.5941

Compare expression of checked genes

Lus10009107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.