Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17600 71 / 3e-14 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G51560 66 / 2e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 64 / 1e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 63 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72840 62 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G11170 62 / 3e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 60 / 2e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19520 60 / 2e-10 disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27170 60 / 2e-10 transmembrane receptors;ATP binding (.1.2) AT1G64070 60 / 2e-10 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004075 [exp] 275 / 1e-86 AT4G12010 348 / 3e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 141 / 9e-39 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10007030 [exp] 135 / 1e-36 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 134 / 3e-36 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 134 / 4e-36 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10024149 [exp] 130 / 6e-36 AT4G19510 213 / 8e-61 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) Lus10016029 [exp] 132 / 1e-35 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006789 [exp] 128 / 4e-34 AT4G12010 325 / 7e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10006732 [exp] 126 / 2e-33 AT4G11170 322 / 8e-97 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070565 [exp] 81 / 1e-17 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 79 / 5e-17 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T001933 [exp] 76 / 5e-16 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 74 / 2e-15 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002428 [exp] 72 / 7e-15 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 72 / 1e-14 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G070700 [exp] 72 / 1e-14 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T001500 [exp] 71 / 4e-14 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018396 [exp] 70 / 5e-14 AT5G36930 374 / 5e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G113701 [exp] 70 / 5e-14 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10009109 pacid=23150053 polypeptide=Lus10009109 locus=Lus10009109.g ID=Lus10009109.BGIv1.0 annot-version=v1.0 ATGGGTGGTACTGGCAAGACGGCTACTGCTCGAGCTTTGCATAAAAATCTAGCACCCTCACATGGTTGCAAGCATCATTTCCTTTCCTACATCAACAACA GATGGGAAGAAGGGCGTGGGTTGGATGATTTATTGAAAGAACTCTATTCTGCCTTGTTGTCCGAGGACATCACGAGACGGGACTTGCGAATTTTTTTCAA AAGGGGACGTCTCAAGCGAGGGAGAGTTTTCGTTGTCCTGGACGAAGTCGAAACATGGGAGCAATTACAAGGGTTGCTTCTGAGTGAAGTGTGGGATCTC ACCAATCTATTTGCACCGGGGAGCATAGTCATTGTCACGACGAGAAATCGAGACGTGCTCGACAGTGTAAAGGCTAATAGAGTAGTTTACCCTATCCAAG GACTGGTTGATCCTCAAGAATCGCTTCAGCTCTTCAGCTTGCACGCATTTGGACGATTCGTCCTTGATTTAAAAAAAAATCTCATAGTAGCGCATATTTT TAAAGGATCAAATGCTCAAACTGTCATGGTTGTACTTGTATGTTTTGGGTGGGTTAGTCCCACGACTATTAAAAGATACGGAGCAATCGTGCTTTTTTCT TTATCTATCACAACATAG
AA sequence Show only first row Show all	>Lus10009109 pacid=23150053 polypeptide=Lus10009109 locus=Lus10009109.g ID=Lus10009109.BGIv1.0 annot-version=v1.0 MGGTGKTATARALHKNLAPSHGCKHHFLSYINNRWEEGRGLDDLLKELYSALLSEDITRRDLRIFFKRGRLKRGRVFVVLDEVETWEQLQGLLLSEVWDL TNLFAPGSIVIVTTRNRDVLDSVKANRVVYPIQGLVDPQESLQLFSLHAFGRFVLDLKKNLIVAHIFKGSNAQTVMVVLVCFGWVSPTTIKRYGAIVLFS LSITT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51560			Disease resistance protein (TI...		Lus10009109 [exp]	0	1
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10009569 [exp]	3.2	0.7459
					Lus10003759 [exp]	8.9	0.7145
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10033946 [exp]	44.4	0.7157

Compare expression of checked genes

Lus10009109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.