Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27760 482 / 2e-170 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 479 / 5e-169 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53100 422 / 5e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 112 / 8e-28 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 110 / 6e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 104 / 6e-25 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 94 / 3e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 81 / 5e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G02540 81 / 9e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 80 / 2e-16 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028534 [exp] 673 / 0 AT4G27760 530 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035481 [exp] 113 / 5e-28 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 113 / 6e-28 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035479 [exp] 110 / 1e-26 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024647 [exp] 109 / 1e-26 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024685 [exp] 108 / 6e-26 AT4G23430 431 / 4e-152 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024648 [exp] 107 / 7e-26 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10038857 [exp] 104 / 1e-24 AT4G23430 436 / 2e-154 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032282 [exp] 103 / 2e-24 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G028900 [exp] 523 / 0 AT4G27760 553 / 0.0 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G182000 [exp] 414 / 2e-143 AT4G27760 432 / 1e-151 FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 115 / 6e-29 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 112 / 2e-27 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 105 / 3e-25 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 103 / 1e-24 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 102 / 3e-24 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 100 / 1e-23 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G453500 [exp] 87 / 1e-18 AT5G15940 405 / 5e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124508 [exp] 79 / 5e-16 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10009112 pacid=23150063 polypeptide=Lus10009112 locus=Lus10009112.g ID=Lus10009112.BGIv1.0 annot-version=v1.0 ATGGCGCCGTCGTCTCCCTCTTCATCTTCGTCTTCTCCGCCGTCTCCCTCCGCTTCTAGCTCGTCGCCTTTGAAAGGGGAAGACAGTACTAAGCAGGGCT TAGGATGGATAGAGTGGCTAAGGGGATGGATGTACGTGATATACGAGATCCTCTTTCAAAGAATCTTGGCCAGTCACTTGCAGAATCCTATGCCTCTGCC TCCTATTAACGACCTCACTTACATCGTCACCGGATCCACCAGCGGCATCGGTCGCGAAACTGCCAGGCAACTAGCGGAGGCGGGCGCGCACGTTGTAATG GCCGTTAGGAATGTTAAGGCAGGCACCGAGTTGATTCAGAAATGGCAGACTGATTGGGCAGGGAAAGGCCTCCCGCTTAACATCGAGGTGATGGAACTTG ATCTTCTCTCGTTGGAATCGGTTGTTAAGTTTGCTGAAGCCTGGAACGCTCATTCACGGCCTCTCAATGTCCTTATCAACAATGCTGGCATTTTTTCCAT TGGAGAACCACAAAGGTTTTCCAAAGATGGATATGAAGAACACATGCAAGTGAATCATCTCGCTCCAGCGTTACTATCAATATTACTATTGCCATCCCTA ATTAGAGGCTCTCCTAGTAGGATTGTCAATGTGAATTCAGTGATTTCTCCTGTAATCTTGACTTTGATAAAAAATCATCAGAAAGTGAGCATTTTCACAT TTTCGTATCGACCACTTTGCTTAAACTTAGAGGAGCTTCAACATTGTCGTTACATGCAGATGCACTATATTGGCTATTGTGACACAGAAGATTTGAATGT TACATCTGGGAAGAGAAAATACACAAGCCTCGTGGGATATACCAGCAGCAAGTTAGCACAGGTAATGTTTAGTAATATTCTCCATAAGCGCTTGCCTGGT GAAGCTGGTATAAACGTCGTGTGTGCTGATCCCGGAATAGTCCATACAAATGTTGCTAGGGATCTTCCGAGAATCCTGCAAACCGGATATAATCTAATAC CGTATTTCATCTTCAGTCCCGAGGAAGGTTCCCGTAGTGCTCTTTTTGCAGCCACAGATCCTCAGATGCCGGAATACTGCGAACTCCTGCAAGCAGAGGA CCATCCCGCCTGTGCATTTATCTCCCAAGATTGTCAACCAGCAAGCCCTTCAGAAGAAGCTCACAGAACTGAGCAATCACATAAACTGTGGGAGAAGACA CTAGAGCTGGTTGGTCTTCCAACAGACGCCGTGGAGAGGCTTCTCCAAGGTGAAGAAATTGTATGCCGATATACGAATCATAACAAGGAGGAATAG
AA sequence Show only first row Show all	>Lus10009112 pacid=23150063 polypeptide=Lus10009112 locus=Lus10009112.g ID=Lus10009112.BGIv1.0 annot-version=v1.0 MAPSSPSSSSSSPPSPSASSSSPLKGEDSTKQGLGWIEWLRGWMYVIYEILFQRILASHLQNPMPLPPINDLTYIVTGSTSGIGRETARQLAEAGAHVVM AVRNVKAGTELIQKWQTDWAGKGLPLNIEVMELDLLSLESVVKFAEAWNAHSRPLNVLINNAGIFSIGEPQRFSKDGYEEHMQVNHLAPALLSILLLPSL IRGSPSRIVNVNSVISPVILTLIKNHQKVSIFTFSYRPLCLNLEELQHCRYMQMHYIGYCDTEDLNVTSGKRKYTSLVGYTSSKLAQVMFSNILHKRLPG EAGINVVCADPGIVHTNVARDLPRILQTGYNLIPYFIFSPEEGSRSALFAATDPQMPEYCELLQAEDHPACAFISQDCQPASPSEEAHRTEQSHKLWEKT LELVGLPTDAVERLLQGEEIVCRYTNHNKEE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Lus10009112 [exp]	0	1
AT3G30300			O-fucosyltransferase family pr...		Lus10005094 [exp]	6.6	0.8820
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Lus10007269 [exp]	7.0	0.8014
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Lus10042401 [exp]	7.7	0.8649
AT1G11820			O-Glycosyl hydrolases family 1...		Lus10031456 [exp]	8.1	0.8467
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10005881 [exp]	10.0	0.8148
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10000120 [exp]	13.6	0.8514
AT2G41820			Leucine-rich repeat protein ki...		Lus10007543 [exp]	14.4	0.8143
AT5G57100			Nucleotide/sugar transporter f...		Lus10020017 [exp]	15.7	0.8511
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10033805 [exp]	18.2	0.8478
AT1G50710			unknown protein		Lus10043109 [exp]	20.7	0.8293

Compare expression of checked genes

Lus10009112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.