Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 171 / 2e-52 MYB ATMYB113 myb domain protein 113 (.1) AT1G66380 155 / 3e-47 MYB ATMYB114 myb domain protein 114 (.1) AT1G56650 157 / 1e-46 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT1G66390 153 / 3e-45 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT3G13540 142 / 8e-41 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT5G35550 141 / 1e-40 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT5G40330 140 / 1e-40 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT5G14750 139 / 2e-40 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT5G52600 138 / 7e-40 MYB AtMYB82 myb domain protein 82 (.1) AT5G16770 137 / 5e-38 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028514 [exp] 422 / 1e-150 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10028513 [exp] 213 / 1e-67 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10009130 [exp] 211 / 8e-67 AT1G66370 202 / 3e-64 myb domain protein 113 (.1) Lus10042522 [exp] 166 / 5e-50 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10033438 [exp] 154 / 6e-45 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10000470 [exp] 153 / 1e-44 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10003277 [exp] 150 / 5e-44 AT1G66370 160 / 2e-48 myb domain protein 113 (.1) Lus10039173 [exp] 140 / 6e-40 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 138 / 4e-39 AT3G13540 241 / 1e-79 myb domain protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125700 [exp] 188 / 1e-58 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125900 [exp] 179 / 3e-55 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G125600 [exp] 179 / 4e-55 AT1G66370 183 / 5e-57 myb domain protein 113 (.1) Potri.017G125800 [exp] 178 / 8e-55 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.017G126000 [exp] 171 / 1e-51 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.006G221800 [exp] 147 / 2e-42 AT4G38620 197 / 5e-62 myb domain protein 4 (.1) Potri.006G221500 [exp] 147 / 2e-42 AT5G35550 174 / 2e-53 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) Potri.001G169600 [exp] 144 / 2e-42 AT5G14750 167 / 9e-53 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.003G079100 [exp] 144 / 2e-42 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.006G221200 [exp] 143 / 4e-42 AT3G13540 169 / 6e-53 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009129 pacid=23150057 polypeptide=Lus10009129 locus=Lus10009129.g ID=Lus10009129.BGIv1.0 annot-version=v1.0 ATGGAAGTAGCAGCAGCAGCAGCGGCTGGAGATCATGGGTTACGTAGAGGAACATGGAGTGAAGAGGAGGACAGGCTGCTCCGAAGGTGCATTCAAACTT ATGGAGAAGGAAGATGGCATCTTGTTCCCGCCCGAGCAGGGTTGAATAGATGCAGAAAAAGCTGCAGGTTGAGATGGTTGAACTACCTGAAACCAAACAT CAAAAGAGGAGAGTTCGAAGGAGCTGAAGCTGATCTACTCATTAGGTTACACAAGCTTTTGGGTAACAGATGGTCACTGATCGCCGGACGTTTACCGGGA AGGACTGCCAACGACGTGAAGAACTATTGGAACACCCACCACAAGGAGAAGGAGAAGAAGAAACTAACCACCACCACGGCGTCGTCCTGCATGCCTGCGG CTGCGTTGACTTTTCCATGCAAAAGACAGCGACATTGTACGGAGCCACCGGTGGTCCTCGTGACAAAGCCATGTCCGAATGAAGGAAAGATAACAAAGAC CAACATCATAAGACCGCGGCCTATGGGCTTGCCCAAAGGATTCTGTTGGCGGGCCGACAAAAATAAGCGGGCCCAGAGCCCATTTGTTGCTGATGAAGAT ATGAATGGCGATGGAAGTAGTGGTACTGTTTGGGCACAGGAACTGAAGAGGTTTTTGGATTGCGTGGATAATTTCCCAGCAGCCACCTGCAGCAAAATGA CAGAACATAATAACAGTAGTTGCAGTAATTATAGTAGTAATGATGAGATTATGAAGTTGGGTGTCGAGGATTTGACGATGTTTGACCATCAGGAGGAAGG CAATTATCAAAGTTGTGGGCGGGATGATGATGTAAGCATTTGGGATCTCCTTCAGCGATCATCTTGA
AA sequence Show only first row Show all	>Lus10009129 pacid=23150057 polypeptide=Lus10009129 locus=Lus10009129.g ID=Lus10009129.BGIv1.0 annot-version=v1.0 MEVAAAAAAGDHGLRRGTWSEEEDRLLRRCIQTYGEGRWHLVPARAGLNRCRKSCRLRWLNYLKPNIKRGEFEGAEADLLIRLHKLLGNRWSLIAGRLPG RTANDVKNYWNTHHKEKEKKKLTTTTASSCMPAAALTFPCKRQRHCTEPPVVLVTKPCPNEGKITKTNIIRPRPMGLPKGFCWRADKNKRAQSPFVADED MNGDGSSGTVWAQELKRFLDCVDNFPAATCSKMTEHNNSSCSNYSSNDEIMKLGVEDLTMFDHQEEGNYQSCGRDDDVSIWDLLQRSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009129 [exp]	0	1
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	6.5	0.9770
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	7.5	0.9031
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10035275 [exp]	8.4	0.8330
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012547 [exp]	9.0	0.7803
					Lus10024141 [exp]	9.2	0.9770
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	11.2	0.9770
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10021778 [exp]	11.3	0.8635
AT4G16050			Aminotransferase-like, plant m...		Lus10043051 [exp]	11.6	0.8556
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041829 [exp]	12.8	0.9054
					Lus10013255 [exp]	13.0	0.9770

Compare expression of checked genes

Lus10009129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.