Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66370 195 / 2e-61 MYB ATMYB113 myb domain protein 113 (.1) AT1G66380 180 / 8e-57 MYB ATMYB114 myb domain protein 114 (.1) AT1G56650 181 / 7e-56 MYB ATMYB75, SIAA1, PAP1 SUC-INDUCED ANTHOCYANIN ACCUMULATION 1, MYELOBLASTOSIS PROTEIN 75, MYB DOMAIN PROTEIN 75, production of anthocyanin pigment 1 (.1) AT1G66390 178 / 1e-54 MYB PAP2, AtMYB90 PRODUCTION OF ANTHOCYANIN PIGMENT 2, myb domain protein 90 (.1) AT3G13540 154 / 2e-45 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT1G22640 151 / 4e-44 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT5G14750 148 / 1e-43 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT4G09460 147 / 5e-43 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT2G16720 147 / 1e-42 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT5G35550 147 / 2e-42 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028513 [exp] 516 / 0 AT1G66370 205 / 3e-65 myb domain protein 113 (.1) Lus10028514 [exp] 227 / 2e-73 AT1G66370 179 / 1e-55 myb domain protein 113 (.1) Lus10009129 [exp] 205 / 1e-64 AT1G66370 179 / 2e-55 myb domain protein 113 (.1) Lus10042522 [exp] 182 / 3e-56 AT1G66370 181 / 7e-57 myb domain protein 113 (.1) Lus10003277 [exp] 165 / 2e-49 AT1G66370 160 / 2e-48 myb domain protein 113 (.1) Lus10000470 [exp] 162 / 7e-48 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 159 / 1e-46 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10039173 [exp] 155 / 2e-45 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 152 / 4e-44 AT3G13540 241 / 1e-79 myb domain protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125700 [exp] 212 / 1e-67 AT1G66370 202 / 1e-64 myb domain protein 113 (.1) Potri.017G125600 [exp] 209 / 2e-66 AT1G66370 183 / 5e-57 myb domain protein 113 (.1) Potri.017G125800 [exp] 207 / 6e-66 AT1G66370 190 / 5e-60 myb domain protein 113 (.1) Potri.017G125900 [exp] 207 / 8e-66 AT1G66370 191 / 1e-60 myb domain protein 113 (.1) Potri.017G126000 [exp] 193 / 3e-60 AT1G66370 188 / 5e-59 myb domain protein 113 (.1) Potri.003G219900 [exp] 162 / 2e-47 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.001G005100 [exp] 161 / 2e-47 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.003G079100 [exp] 156 / 5e-47 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.013G056500 [exp] 159 / 1e-46 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.001G169600 [exp] 155 / 2e-46 AT5G14750 167 / 9e-53 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009130 pacid=23150042 polypeptide=Lus10009130 locus=Lus10009130.g ID=Lus10009130.BGIv1.0 annot-version=v1.0 ATGGAAGGGGGAGAGATGCAGAGTACTGTTGGATTGAGGAAAGGGGCTTGGACTGAAGAGGAGGATAGGCTGCTTCGCAAGTGCATTGCCTCCTTCGGTG AAGGCAGATGGCATCAGGTTCCCCTCCGCGCAGGGCTAAATAGATGCAGAAAAAGTTGCAGACTAAGATGGTTGAACTACCTGAAGCCAAATATTAAGAG AGGAGAGTTCTCTGAAGATGAAGTCGACCTTATCACTAGACTCCACAAACTATTGGGTAACAGGTGGTCCCTGATCGCCGGACGGTTGCCGGGGAGAACG GCCAACGACGTGAAGAACTACTGGAACACCCACCAGAAGAAAAAGACGGCGTCGTTTCAGTGCAACCCAAGCTATACTAATAACAACAAATCAGAGCAGT TCAAGAAAAATAATAATAATAATAATAATAATAATAACGATGCAAAACTGCAAATAACAAAGAACAACATCATCAAGCCGCGACCTCGGACCTTCTCATC GAAAAGCTTCTTCTGGGCGGGGAAGAAAATTACCACAAAGCCTCAGAATCCTGCATTTATTACAAATAAGCCCCGCAATGTTGATGATGACGTGTCAAAG AAGCGGTCGTATCATCAGATGCGTGGTAGCGGCGGAGAAAGCACGTGGGCTGACCAGCTGGAAAGGTTTCTGAACGACGGCGGCGTTGTTAATGACGACG ATGGGTCGCCGGCGGCGGGGATTAATGGCGGCCATGAAGCGGACGTTATTAATCGAACTGGAAAGTTAATATGGTCGGATAATGACGAAGAGAAGAACAA CAATATGGGTGATATTGGGACAACTACGATGTTTGATGGTCAGGATGATCATAATCAAAGTTGCTGGAGTGATATTGATATTTGGGATCTCCTCGGTGAC CATCGTGGCATTTAG
AA sequence Show only first row Show all	>Lus10009130 pacid=23150042 polypeptide=Lus10009130 locus=Lus10009130.g ID=Lus10009130.BGIv1.0 annot-version=v1.0 MEGGEMQSTVGLRKGAWTEEEDRLLRKCIASFGEGRWHQVPLRAGLNRCRKSCRLRWLNYLKPNIKRGEFSEDEVDLITRLHKLLGNRWSLIAGRLPGRT ANDVKNYWNTHQKKKTASFQCNPSYTNNNKSEQFKKNNNNNNNNNNDAKLQITKNNIIKPRPRTFSSKSFFWAGKKITTKPQNPAFITNKPRNVDDDVSK KRSYHQMRGSGGESTWADQLERFLNDGGVVNDDDGSPAAGINGGHEADVINRTGKLIWSDNDEEKNNNMGDIGTTTMFDGQDDHNQSCWSDIDIWDLLGD HRGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009130 [exp]	0	1
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10003200 [exp]	1.4	0.8690
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10017302 [exp]	2.4	0.7997
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	6.2	0.8223
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	15.4	0.7921
AT3G10720			Plant invertase/pectin methyle...		Lus10008937 [exp]	15.5	0.7745
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	15.7	0.7910
AT5G04970			Plant invertase/pectin methyle...		Lus10028882 [exp]	16.7	0.7521
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	18.9	0.7536
					Lus10021242 [exp]	23.9	0.7442
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	24.0	0.7480

Compare expression of checked genes

Lus10009130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.