Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14920 285 / 6e-95 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 281 / 6e-93 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G66350 278 / 2e-92 GRAS RGL1 RGA-like 1 (.1) AT3G03450 278 / 6e-92 GRAS RGL2 RGA-like 2 (.1) AT5G17490 265 / 4e-87 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT5G48150 146 / 9e-42 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 140 / 6e-40 GRAS SCL21 SCARECROW-like 21 (.1) AT1G55580 129 / 8e-36 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT1G50600 127 / 3e-34 GRAS SCL5 scarecrow-like 5 (.1) AT1G50420 125 / 5e-34 GRAS SCL-3, SCL3 scarecrow-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028511 [exp] 334 / 8e-114 AT5G17490 527 / 0.0 RGA-like protein 3 (.1) Lus10033583 [exp] 327 / 2e-110 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 325 / 7e-110 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 219 / 5e-69 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10012554 [exp] 166 / 1e-47 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 165 / 1e-47 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10017930 [exp] 156 / 3e-45 AT1G66350 241 / 2e-73 RGA-like 1 (.1) Lus10031172 [exp] 156 / 7e-45 AT3G03450 257 / 5e-78 RGA-like 2 (.1) Lus10036932 [exp] 153 / 3e-44 AT1G66350 258 / 1e-79 RGA-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125200 [exp] 331 / 1e-111 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 326 / 7e-110 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 303 / 5e-101 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 301 / 3e-100 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 167 / 1e-48 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.005G095100 [exp] 164 / 3e-48 AT1G66350 252 / 3e-77 RGA-like 1 (.1) Potri.015G091200 [exp] 159 / 2e-46 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.012G093900 [exp] 158 / 3e-46 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.016G027800 [exp] 149 / 1e-43 AT1G14920 244 / 1e-75 RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) Potri.001G361700 [exp] 148 / 2e-42 AT1G50600 637 / 0.0 scarecrow-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10009133 pacid=23150064 polypeptide=Lus10009133 locus=Lus10009133.g ID=Lus10009133.BGIv1.0 annot-version=v1.0 ATGCTAGACCTACGCCCCGCCGACGTGGAGGCGGTGGCGGTGAACTCTGTGTTCGAGCTACACCGTCTTCTCAGCCAATCGGCAGGGATAGATAAAGTAC TGTCGTCGATCAAGGCGATGAAGCCAAAGATCGTGACGGTTGTGGAGCAAGAAGCCAACCACAACGGGCCGGTATTCGTGGACCGGTTTACGGAGGCTCT GCATTACTACTCCAGCCTGTTCGACTCTCTGGAAGGGTCGTCCCCGAGCCAGGATCTGGTGATGTCGGAGCTCTACCTCGGGAGGCAGATTTGCAACGTG GTGGCGTGCGAAGGAGGCGACCGAGTTGAACGGCACGAGACGTTGACTCAGTGGAGGGGCCGGATGGAATCGGCCGGATTTGACCCGGTTCACCTGGGGT CGAATGCGTACAAGCAAGCTAGTACGTTACTTGCGCTGTTCGCCGGCGGGGATGGGTACAAGGTGGAGGAGAACGACGGTTCTCTGATGCTTGGGTGGCA CACTAGACCTCTCATAGCCACGTCGGCATGGCAGCTCGCCAAGTGA
AA sequence Show only first row Show all	>Lus10009133 pacid=23150064 polypeptide=Lus10009133 locus=Lus10009133.g ID=Lus10009133.BGIv1.0 annot-version=v1.0 MLDLRPADVEAVAVNSVFELHRLLSQSAGIDKVLSSIKAMKPKIVTVVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSSPSQDLVMSELYLGRQICNV VACEGGDRVERHETLTQWRGRMESAGFDPVHLGSNAYKQASTLLALFAGGDGYKVEENDGSLMLGWHTRPLIATSAWQLAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Lus10009133 [exp]	0	1
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	1.4	0.8756
AT2G19270			unknown protein		Lus10015539 [exp]	4.2	0.8494
AT1G32860			Glycosyl hydrolase superfamily...		Lus10001660 [exp]	4.5	0.8564
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	7.2	0.8699
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	8.9	0.8495
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	13.4	0.8656
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	13.9	0.8535
AT4G17080			Histone H3 K4-specific methylt...		Lus10042858 [exp]	16.7	0.8110
AT5G67020			unknown protein		Lus10019344 [exp]	17.7	0.8659
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10007092 [exp]	19.3	0.7993

Compare expression of checked genes

Lus10009133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.