Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32490 122 / 3e-33 AtENODL4 early nodulin-like protein 4 (.1) AT4G28365 117 / 7e-32 AtENODL3 early nodulin-like protein 3 (.1) AT5G53870 116 / 6e-30 AtENODL1 early nodulin-like protein 1 (.1) AT4G27520 110 / 1e-27 AtENODL2 early nodulin-like protein 2 (.1) AT2G25060 103 / 8e-27 AtENODL14 early nodulin-like protein 14 (.1) AT5G25090 94 / 5e-23 AtENODL13 early nodulin-like protein 13 (.1) AT4G31840 91 / 6e-22 AtENODL15 early nodulin-like protein 15 (.1) AT3G20570 91 / 9e-22 AtENODL9 early nodulin-like protein 9 (.1) AT4G30590 90 / 2e-21 AtENODL12 early nodulin-like protein 12 (.1) AT3G18590 87 / 3e-20 AtENODL5 early nodulin-like protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018617 [exp] 120 / 6e-33 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10039852 [exp] 118 / 5e-32 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10011158 [exp] 91 / 1e-21 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 90 / 3e-21 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10019955 [exp] 87 / 1e-20 AT4G30590 120 / 1e-34 early nodulin-like protein 12 (.1) Lus10026880 [exp] 87 / 4e-20 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10003432 [exp] 83 / 6e-19 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10032111 [exp] 81 / 5e-18 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10009617 [exp] 80 / 1e-17 AT3G18590 148 / 1e-45 early nodulin-like protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117800 [exp] 159 / 2e-46 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G398800 [exp] 150 / 9e-43 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.017G011200 [exp] 134 / 3e-38 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.001G187700 [exp] 92 / 2e-22 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.001G419200 [exp] 92 / 5e-22 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.011G135400 [exp] 92 / 6e-22 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.018G018200 [exp] 91 / 7e-22 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.015G052000 [exp] 90 / 2e-21 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.006G184100 [exp] 89 / 4e-21 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.006G264600 [exp] 89 / 5e-21 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10009196 pacid=23145599 polypeptide=Lus10009196 locus=Lus10009196.g ID=Lus10009196.BGIv1.0 annot-version=v1.0 ATGGTGGGTTGTGCAAGGACTTTGTCTGTGTTGTTAGGTTGTTTGGTGGCTTCTTGTGTGTTCAGCAGCCAGCCAGTGGTGGCTAACAACAGCATCCAAG TTGGAGGAAGAGATGGTTGGGTAGTGAATCCTTCAGAGAGCTACGATCACTGGGCTCATCGTCTACGATTTCAAGTCAATGACTCCCTCGTCTTCAAAGG GTCCGACTCAGTATTGCAAGTGCAGAAAGAAGAGTACAACAGTTGCGACGCAAGCAACCCCCTCAAGACTATGAATACCAATAGCTCAGGATCCTTCCGA TTCGACCGATCAGGACCCTTTTATTTCATCTCCGGTAACAAGACCAACTGCCTCACCGGCCAGAAACTCGTCGTCGTTGTCCTCGCCGTCAGAACTCACA AAACCCCGCCATCGTCTTCCCCTGCTCTGCCTCCTACTACTACTTCCCCTTTTCCGTCTATGGCCCCACAACCCCCTTCAGCTTCTTCTCCATCGCCGAT TCCACTCACACCTTCTCTACCCCCGCAGCCCTCACCTGCTTCTTCCCCATCGCCAGTTTCAGCCACCCCTTCTCTGGCCCCACAGCCCTCTGCTGCTGCT TCTTCTCCATTGCCTAGCTCGGCCCCACCAGAGAGTTCCCCTTCCTCGTCCCCTGCACCTTCAGAATCTAATTCACCGGCGGGAGCTCCAGACAGTTCAC CGGAGGGGGCTCCCGCGGGGCAGCCGGGTGCTTCTCCTTCTTCGCCGCCGATAGGAGAAGACACCACTCCCGGAGCGGCTGACCAGCTTTCGCCTGCAGA CTCAAGTAGTACTACTTCTCCGGATTCGTCGTCAGCGTGGAGGGGTGTTGCCGGAATCTACCCGGCGTTTGTGGTAGTGGGACTTGCAGGGTTGCTTACG TTCGTCATGTAA
AA sequence Show only first row Show all	>Lus10009196 pacid=23145599 polypeptide=Lus10009196 locus=Lus10009196.g ID=Lus10009196.BGIv1.0 annot-version=v1.0 MVGCARTLSVLLGCLVASCVFSSQPVVANNSIQVGGRDGWVVNPSESYDHWAHRLRFQVNDSLVFKGSDSVLQVQKEEYNSCDASNPLKTMNTNSSGSFR FDRSGPFYFISGNKTNCLTGQKLVVVVLAVRTHKTPPSSSPALPPTTTSPFPSMAPQPPSASSPSPIPLTPSLPPQPSPASSPSPVSATPSLAPQPSAAA SSPLPSSAPPESSPSSSPAPSESNSPAGAPDSSPEGAPAGQPGASPSSPPIGEDTTPGAADQLSPADSSSTTSPDSSSAWRGVAGIYPAFVVVGLAGLLT FVM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10009196 [exp]	0	1
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011085 [exp]	20.6	0.6383
AT5G39450			F-box family protein (.1)		Lus10037697 [exp]	31.9	0.5881
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10019688 [exp]	33.3	0.6142
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006058 [exp]	33.4	0.5979
AT5G56820			F-box/RNI-like/FBD-like domain...		Lus10039271 [exp]	50.8	0.5289
AT4G38520			Protein phosphatase 2C family ...		Lus10025076 [exp]	61.4	0.5275
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	78.5	0.5473
AT3G60070			Major facilitator superfamily ...		Lus10034394 [exp]	90.5	0.5756
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	197.1	0.5092

Compare expression of checked genes

Lus10009196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.