Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08500 106 / 4e-27 AtENODL18 early nodulin-like protein 18 (.1) AT5G15350 50 / 2e-07 AtENODL17 early nodulin-like protein 17 (.1) AT4G12880 46 / 4e-06 AtENODL19 early nodulin-like protein 19 (.1.2) AT3G20570 47 / 6e-06 AtENODL9 early nodulin-like protein 9 (.1) AT5G26330 45 / 2e-05 Cupredoxin superfamily protein (.1) AT5G20230 43 / 0.0001 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT3G27200 41 / 0.0003 Cupredoxin superfamily protein (.1) AT3G01070 40 / 0.0004 AtENODL16 early nodulin-like protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037998 [exp] 246 / 2e-81 AT1G08500 101 / 1e-26 early nodulin-like protein 18 (.1) Lus10036067 [exp] 103 / 2e-25 AT1G08500 221 / 1e-72 early nodulin-like protein 18 (.1) Lus10041570 [exp] 47 / 3e-06 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 47 / 6e-06 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10026064 [exp] 45 / 2e-05 AT5G15350 113 / 4e-32 early nodulin-like protein 17 (.1) Lus10008720 [exp] 45 / 2e-05 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10007026 [exp] 45 / 2e-05 AT2G32300 96 / 4e-25 uclacyanin 1 (.1) Lus10014356 [exp] 44 / 3e-05 AT5G15350 108 / 2e-30 early nodulin-like protein 17 (.1) Lus10002618 [exp] 42 / 6e-05 AT3G27200 89 / 2e-23 Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G150600 [exp] 195 / 1e-61 AT1G08500 97 / 2e-24 early nodulin-like protein 18 (.1) Potri.014G072700 [exp] 168 / 4e-51 AT1G08500 92 / 1e-22 early nodulin-like protein 18 (.1) Potri.001G273000 [exp] 110 / 1e-28 AT1G08500 213 / 1e-69 early nodulin-like protein 18 (.1) Potri.009G067300 [exp] 105 / 1e-26 AT1G08500 207 / 2e-67 early nodulin-like protein 18 (.1) Potri.014G049600 [exp] 51 / 1e-07 AT3G60270 111 / 8e-31 Cupredoxin superfamily protein (.1) Potri.017G088600 [exp] 49 / 9e-07 AT5G15350 194 / 5e-64 early nodulin-like protein 17 (.1) Potri.016G015200 [exp] 47 / 4e-06 AT3G27200 73 / 1e-16 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 45 / 2e-05 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G101300 [exp] 44 / 3e-05 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.001G332200 [exp] 44 / 3e-05 AT3G27200 171 / 5e-55 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10009231 pacid=23160175 polypeptide=Lus10009231 locus=Lus10009231.g ID=Lus10009231.BGIv1.0 annot-version=v1.0 ATGAAATCCACCGCGATTCTTCAGATCGCGATGGCCGCTGCTTTCTTAATCGCATCCGCGGCGTCCCAGGCTCTTCCAACAGGCTACAAGAACTACACCG TCGGGGAGGATGCCGGCTGGTTCTTCAACTCCACTACCAACACTCCCTCCGCCAACTACTCGTCTTGGGCATCCTCTCAGACCTTCAATTTGGGAGACTC CCTCATATTCCCGACGAATTCGAACCAGACACTTATCCAGACCTTCAACGAGTCCACATTCCGGAGCTGCTCGGTTGAAAATTCCTCAGACGACGATACT TTCCAGTACTTGGGAGGGGCACAGAGATACGGCGAGGCTTTGACCGTGGTAGTGCCGTTGACAATCGAAGGCCCCAACTACTACTTCTCCGATGCCAACG ACGGGGTCCAGTGCCAGAACGGACTAGCATTCGAGATCCAAGTCAACCGAGGGCTCGGACTTCCGCCCAGCCTTAATCAGCCACCGCCGCCTGCCTACAG AGAGCCTCCTGGCCCTGACGATGCACAATCGCCGCCGGTTACTATTGCTGGAGGATCTCCGGCCCTGGATAACGGTGCGATTATGATGGGATCCGCCGGT ACGGTGCTGACCATAGCGTTTGCGATCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTTTAG
AA sequence Show only first row Show all	>Lus10009231 pacid=23160175 polypeptide=Lus10009231 locus=Lus10009231.g ID=Lus10009231.BGIv1.0 annot-version=v1.0 MKSTAILQIAMAAAFLIASAASQALPTGYKNYTVGEDAGWFFNSTTNTPSANYSSWASSQTFNLGDSLIFPTNSNQTLIQTFNESTFRSCSVENSSDDDT FQYLGGAQRYGEALTVVVPLTIEGPNYYFSDANDGVQCQNGLAFEIQVNRGLGLPPSLNQPPPPAYREPPGPDDAQSPPVTIAGGSPALDNGAIMMGSAG TVLTIAFAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10009231 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10030750 [exp]	1.7	0.7918
AT5G51750		ATSBT1.3	subtilase 1.3 (.1)		Lus10018720 [exp]	3.5	0.7451
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Lus10028202 [exp]	6.3	0.7267
AT2G26680			unknown protein		Lus10030089 [exp]	6.7	0.7255
AT3G60750			Transketolase (.1.2)		Lus10007839 [exp]	7.5	0.6527
AT2G17240			unknown protein		Lus10043214 [exp]	10.2	0.7212
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	10.2	0.7046
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	13.9	0.7279
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10011976 [exp]	14.1	0.7236
					Lus10016642 [exp]	17.5	0.6657

Compare expression of checked genes

Lus10009231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.