Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45500 643 / 0 AAA-type ATPase family protein (.1.2) AT3G27120 313 / 6e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G34560 256 / 7e-81 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G80350 253 / 2e-78 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27600 247 / 5e-77 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G19740 238 / 3e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 237 / 4e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G02480 231 / 4e-66 AAA-type ATPase family protein (.1) AT4G28000 227 / 5e-66 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 215 / 4e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038001 [exp] 907 / 0 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041563 [exp] 295 / 2e-92 AT3G27120 679 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038499 [exp] 259 / 8e-82 AT2G34560 579 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10012530 [exp] 256 / 1e-79 AT3G27120 582 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011477 [exp] 254 / 2e-78 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 253 / 3e-78 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019537 [exp] 247 / 5e-77 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10023310 [exp] 249 / 4e-76 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10004891 [exp] 243 / 2e-75 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G071900 [exp] 718 / 0 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2) Potri.001G331200 [exp] 304 / 3e-96 AT3G27120 661 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G085200 [exp] 265 / 3e-84 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G065100 [exp] 256 / 1e-80 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G022216 [exp] 251 / 2e-78 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.001G331300 [exp] 248 / 7e-78 AT3G27120 400 / 2e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G022300 [exp] 249 / 8e-78 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 244 / 5e-76 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 244 / 5e-76 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.004G184500 [exp] 244 / 8e-76 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04212 [flax] [poplar] MIT MIT (microtubule interacting and transport) domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10009233 pacid=23160189 polypeptide=Lus10009233 locus=Lus10009233.g ID=Lus10009233.BGIv1.0 annot-version=v1.0 ATGAATTTCTGGAAAGACGTGATCGATTCTCTGTCCTCAGTCTTCTCACCTGAAAACTCAGCTTCTCCTGAACGAAAACCTAGCAGCTCAACGATCATGG AATCCGTTGCTGGAGGAGCTTCCAACGAACGTTGCGCCTATAAGTTGAAAGGATACTACGATCTGGCCACAGAGGAGATCAACAAGGCCGTGAGGAACGA AGAGTGGGGGTTGGTCAATGACGCGATCATCCATTACAAGAACGCACAGCGGATACTGACGGAAGCAAGCTCCACGCCTGCGCCTTCTTATATCAGCTCC AGTGAACAAGATAAGGTTAAATCTTACCGTCAGAAGATCTCAAATTGGCAGTCTCAAGTTACTGAAAGATTGCAAGCTTTAGATCGACGCAGAGTTTTGC CATCCACATCATCTTCCAGACAAGATTTGCCAAAGAGGTCTACTGCGTCAACTAGAAACACTCCAGTTATCAGGAATCAAAGCCCCAGCGCTACTACCAA TGCAAAACCTGTTGGGGATTCTGGAAATAGTTATGCAGCAAAACTAGTTGAAATGATAAATACATCAATAGTGGATCGGAGTCCTTCAGTGAAATGGGAA GATGTTGCTGGTCTTGAGAAGGCGAAGCAAGCCCTAATGGAAATGGTTATTTTACCTACTAAAAGGAGAGACCTCTTCACTGGCCTTAGGAGACCAGCTA AAGGTCTGCTTCTCTTTGGACCGCCTGGAAATGGTAAAACAATGCTTGCCAAGGCAGTTGCTTCAGAATCACAGGCAACATTTTTTAATGTTTCAGCCTC TTCCTTGACATCAAAATGGGTGGGAGAGGCTGAAAAGCTTGTTCGTACTCTATTTACAGTTGCTGTATCCAGACAACCTTCTGTTATTTTCATGGATGAA ATTGATAGTGTGATGTCAACTAGGAAGGCTGATGAGAATGATGCTAGCAGGAGGTTGAAATCTGAGTTTCTGATACAGTTTGACGGGGTAACATCTAATG CCAACGATTTAGTAATTGTAATCGGAGCTACAAATAAACCTCAGGAGTTGGATGACGCAGTTCTTAGGAGATTGGTTAAGAGAATATACATACCACTGCC AGATGAAAACATTAGGAGGCTTCTTTTTAAGCATAAACTCAAAGGACAGGCTTTTTCCTTGCCTGGCAGAGACCTTGAGAGGCTAGTTATAGCGACAGAA GGATACTCAGGAAGTGATCTACAAGCTCTATGTGAAGAAGCAGCGATGATGCCAATTAGAGAACTCGGTGCCAATATCCTCAACGTGGATGCCAACCAGG TGAGATCCCTAAGATACGAAGATTTTCAGAAGGCAATGACGGTGATCAGACCCAGCTTGAGCAAAAGCAAGTGGCAAGAGCTTGAACGATGGAACGACGA GTTTGGTTCCGGTTGA
AA sequence Show only first row Show all	>Lus10009233 pacid=23160189 polypeptide=Lus10009233 locus=Lus10009233.g ID=Lus10009233.BGIv1.0 annot-version=v1.0 MNFWKDVIDSLSSVFSPENSASPERKPSSSTIMESVAGGASNERCAYKLKGYYDLATEEINKAVRNEEWGLVNDAIIHYKNAQRILTEASSTPAPSYISS SEQDKVKSYRQKISNWQSQVTERLQALDRRRVLPSTSSSRQDLPKRSTASTRNTPVIRNQSPSATTNAKPVGDSGNSYAAKLVEMINTSIVDRSPSVKWE DVAGLEKAKQALMEMVILPTKRRDLFTGLRRPAKGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEAEKLVRTLFTVAVSRQPSVIFMDE IDSVMSTRKADENDASRRLKSEFLIQFDGVTSNANDLVIVIGATNKPQELDDAVLRRLVKRIYIPLPDENIRRLLFKHKLKGQAFSLPGRDLERLVIATE GYSGSDLQALCEEAAMMPIRELGANILNVDANQVRSLRYEDFQKAMTVIRPSLSKSKWQELERWNDEFGSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10024544 [exp]	1.7	0.9478
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	2.0	0.9437
AT1G72710		CKL2	casein kinase 1-like protein 2...		Lus10037621 [exp]	2.4	0.9485
AT5G55060			unknown protein		Lus10021546 [exp]	2.6	0.9392
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10034705 [exp]	2.8	0.9369
AT1G27900			RNA helicase family protein (....		Lus10015812 [exp]	3.2	0.9318
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	3.2	0.9512
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	4.2	0.9401
AT1G55680			Transducin/WD40 repeat-like su...		Lus10037252 [exp]	6.0	0.9232
AT2G14255			Ankyrin repeat family protein ...		Lus10012455 [exp]	6.6	0.9089

Compare expression of checked genes

Lus10009233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.