Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01680 185 / 7e-60 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT1G09540 177 / 1e-55 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT1G57560 174 / 9e-55 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 173 / 4e-54 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT3G13890 162 / 7e-50 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT1G63910 151 / 2e-45 MYB AtMYB103 myb domain protein 103 (.1) AT3G12720 144 / 2e-43 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G02940 137 / 2e-40 MYB ATMYB107 myb domain protein 107 (.1) AT3G61250 134 / 1e-39 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT5G16770 134 / 6e-39 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015608 [exp] 159 / 2e-48 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10024669 [exp] 149 / 2e-43 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10032298 [exp] 149 / 3e-43 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10001226 [exp] 138 / 8e-41 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10038395 [exp] 137 / 2e-40 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10031281 [exp] 136 / 7e-40 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10039610 [exp] 136 / 2e-39 AT5G12870 219 / 3e-69 myb domain protein 46 (.1) Lus10031850 [exp] 135 / 2e-39 AT3G08500 224 / 1e-70 myb domain protein 83 (.1) Lus10002559 [exp] 135 / 2e-39 AT5G12870 225 / 7e-72 myb domain protein 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G111200 [exp] 191 / 1e-59 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.005G001600 [exp] 183 / 4e-57 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.002G185900 [exp] 182 / 3e-56 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.013G001000 [exp] 179 / 2e-55 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.015G082700 [exp] 169 / 3e-52 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.012G084100 [exp] 166 / 5e-51 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.010G004300 [exp] 160 / 6e-49 AT1G57560 247 / 4e-80 myb domain protein 50 (.1) Potri.001G197000 [exp] 160 / 8e-49 AT3G13890 256 / 1e-82 MALE STERILE 35, myb domain protein 26 (.1.2) Potri.001G099800 [exp] 150 / 9e-46 AT1G63910 319 / 3e-108 myb domain protein 103 (.1) Potri.003G132000 [exp] 150 / 1e-45 AT1G63910 317 / 2e-107 myb domain protein 103 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009263 pacid=23160191 polypeptide=Lus10009263 locus=Lus10009263.g ID=Lus10009263.BGIv1.0 annot-version=v1.0 ATGGGGAGACACTCCTGCTGCTATAAACAGAAGCTCAGAAAGGGCTTATGGTCCCCTGAAGAAGACGAGAAACTCCTCCGTCACATCACCAAGTTCGGTC ATGGCTGCTGGAGCTCTGTCCCCAAACAAGCCGGATTACAGAGGTGCGGAAAGAGTTGCAGGCTGAGATGGATAAATTACTTGCGTCCTGATTTGAAACG CGGCGCATTCTCCCAGCAGGAAGAGAATCTGATCATAGAGCTCCATGCTGTTCTTGGCAACAGGATGCTCTGTTTTTTTGGTTTTGTAATGCTCTGCATT TTGTTTTTGTTTCAGGTGGTCTCAAATTGCGGCGCAGTTGCCTGGAAGGACGGACAACGAGATAAAGAATCTGTGGAATTCTTGCTTGAAAAAGAAGCTT CGGCAGAGAGGGATTGA
AA sequence Show only first row Show all	>Lus10009263 pacid=23160191 polypeptide=Lus10009263 locus=Lus10009263.g ID=Lus10009263.BGIv1.0 annot-version=v1.0 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKFGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRMLCFFGFVMLCI LFLFQVVSNCGAVAWKDGQRDKESVEFLLEKEASAERD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	0	1
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	2.4	0.8486
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	3.5	0.8054
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	7.5	0.7950
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	8.5	0.7819
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	8.5	0.8216
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	9.2	0.7776
AT1G61100			disease resistance protein (TI...		Lus10011217 [exp]	11.0	0.7716
AT3G57200			unknown protein		Lus10042032 [exp]	11.8	0.7571
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015156 [exp]	19.7	0.7790
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001386 [exp]	20.2	0.7909

Compare expression of checked genes

Lus10009263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.