Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37180 208 / 6e-65 GARP Homeodomain-like superfamily protein (.1.2) AT2G03500 147 / 5e-41 GARP Homeodomain-like superfamily protein (.1) AT1G49560 140 / 4e-39 GARP Homeodomain-like superfamily protein (.1) AT1G13300 134 / 1e-36 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT1G25550 134 / 1e-36 GARP myb-like transcription factor family protein (.1) AT3G25790 131 / 1e-35 GARP myb-like transcription factor family protein (.1) AT1G68670 110 / 1e-27 GARP myb-like transcription factor family protein (.1) AT3G13040 70 / 2e-13 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G06020 69 / 3e-13 GARP Homeodomain-like superfamily protein (.1) AT2G20400 68 / 1e-12 GARP myb-like HTH transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019639 [exp] 594 / 0 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2) Lus10012056 [exp] 157 / 3e-45 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 144 / 4e-40 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 137 / 2e-37 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10043304 [exp] 137 / 9e-37 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10021699 [exp] 124 / 6e-33 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 124 / 9e-33 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10034280 [exp] 123 / 2e-32 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10019452 [exp] 111 / 4e-27 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039400 [exp] 275 / 3e-91 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 254 / 5e-83 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.009G106600 [exp] 176 / 6e-52 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 170 / 1e-49 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.008G117500 [exp] 125 / 4e-33 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 104 / 3e-25 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 103 / 6e-25 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 97 / 2e-22 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.018G151400 [exp] 74 / 2e-14 AT3G13040 176 / 4e-50 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 69 / 4e-13 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009334 pacid=23148887 polypeptide=Lus10009334 locus=Lus10009334.g ID=Lus10009334.BGIv1.0 annot-version=v1.0 ATGGAGCTGAGCTTGGATTTGGGTCCGGTGTTCGTACCGAAAACAGTTGACCAGTGTCTGAAAGAGGTCTCCAAGCTCAAGGACTCGAATCAGAAGCTGT CCAAGCTCGACGATTTCGTAAATCGTCTGGAAGATGAGCGGAGGAAGATCGACGGGTTTCGCAGGGAGCTCCCTCTCTGCTTCCTCCTCTTGACCGATGC TATTTTGAAGTTGAAGGAGGAAGCATTGGCAGTGAAGAGGAATTGCTGCGGCGAAGATGATGCAGAAGGGAAGAAGAAGAAGAAGAGCTGGATGGAGTCT GTCCAGCTATGGAGAAATGGTGATTCCACCAGCAAATCTGAACAGAAACAGAGGAGTGATGAAGAGGACAATCGGTCGACATGTGAGAATCCGATCAAGA AGGGGAGTAATGGTGTGAGGAAAGAGGAAGAGAAGGAGGTGGTTTCACAGGCGACTGAGCTGTCTCTGATGACTCCATTTGCTGCTGCTACACAGCAAGT GAAGGTTTTTCATGAAAGCATCAATAATAATAAGCCAAGGCTGGGATTGGGACAGCAGTTCAACAAGAAGCAAAGGAGGTGCTGGGCGCCTGAACTTCAC AGGCTGTTTGTGGATGTGCTTGAAGAGCTTGGAGGGCCTCATGTGGCCACTCCCAAGCAGATAAGAGACAAGATGCAAGTGGAAGGACTCACTAATGATG AAGTCAAAAGCCATTTGCAAAAGTACAGGCTTCATATCCGCAAGCATTCGACTTCTCCGACTTCCCAAGCTAAATATGGAGGCAATTGCAATGAGACATC GAACGATGTGAACTTACTGCAGTCTAGTTCTCCACAAGGTCCTTTGGTTGGAAGCAATGACGGGATATCGGAGAGTCATGATAGCTCGAATGGAGCGATC GAGAAAGCAAATGTATGA
AA sequence Show only first row Show all	>Lus10009334 pacid=23148887 polypeptide=Lus10009334 locus=Lus10009334.g ID=Lus10009334.BGIv1.0 annot-version=v1.0 MELSLDLGPVFVPKTVDQCLKEVSKLKDSNQKLSKLDDFVNRLEDERRKIDGFRRELPLCFLLLTDAILKLKEEALAVKRNCCGEDDAEGKKKKKSWMES VQLWRNGDSTSKSEQKQRSDEEDNRSTCENPIKKGSNGVRKEEEKEVVSQATELSLMTPFAAATQQVKVFHESINNNKPRLGLGQQFNKKQRRCWAPELH RLFVDVLEELGGPHVATPKQIRDKMQVEGLTNDEVKSHLQKYRLHIRKHSTSPTSQAKYGGNCNETSNDVNLLQSSSPQGPLVGSNDGISESHDSSNGAI EKANV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10009334 [exp]	0	1
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10019639 [exp]	1.0	0.9595
AT5G53050			alpha/beta-Hydrolases superfam...		Lus10022392 [exp]	7.9	0.9367
AT1G64820			MATE efflux family protein (.1...		Lus10009140 [exp]	7.9	0.9396
AT5G65030			unknown protein		Lus10026049 [exp]	9.2	0.9494
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10015824 [exp]	16.0	0.9428
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	16.0	0.9408
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10028625 [exp]	17.5	0.9349
AT2G20830			transferases;folic acid bindin...		Lus10039790 [exp]	21.2	0.9340
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10031621 [exp]	22.0	0.9268
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	22.1	0.9366

Compare expression of checked genes

Lus10009334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.