Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36920 316 / 1e-103 AP2_ERF FL1, FLO2, AP2 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) AT5G67180 268 / 4e-86 AP2_ERF TOE3 target of early activation tagged (EAT) 3 (.1) AT2G28550 250 / 7e-78 AP2_ERF TOE1, RAP2.7 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) AT5G60120 148 / 2e-39 AP2_ERF TOE2 target of early activation tagged (EAT) 2 (.1), target of early activation tagged (EAT) 2 (.2) AT5G57390 140 / 5e-36 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G51190 139 / 2e-35 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 134 / 6e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20840 137 / 7e-35 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT4G37750 136 / 8e-35 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 134 / 1e-33 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019331 [exp] 492 / 3e-172 AT4G36920 392 / 1e-133 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041595 [exp] 310 / 1e-101 AT4G36920 370 / 2e-125 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10004990 [exp] 303 / 3e-97 AT4G36920 369 / 2e-123 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10026477 [exp] 248 / 2e-78 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10023165 [exp] 248 / 3e-76 AT4G36920 302 / 2e-97 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019905 [exp] 244 / 5e-75 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10015055 [exp] 239 / 2e-73 AT2G28550 302 / 1e-97 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10018124 [exp] 238 / 7e-73 AT2G28550 342 / 4e-113 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10036141 [exp] 216 / 2e-64 AT2G28550 330 / 4e-108 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046200 [exp] 305 / 2e-98 AT4G36920 361 / 2e-120 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.005G140700 [exp] 296 / 3e-95 AT4G36920 355 / 1e-118 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Potri.008G045300 [exp] 258 / 1e-80 AT2G28550 292 / 1e-93 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.006G132400 [exp] 254 / 7e-79 AT2G28550 307 / 2e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.016G084500 [exp] 248 / 7e-77 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.010G216200 [exp] 217 / 4e-65 AT2G28550 263 / 9e-83 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Potri.001G018400 [exp] 142 / 7e-37 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.017G078600 [exp] 139 / 9e-37 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G205700 [exp] 140 / 2e-36 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 138 / 4e-35 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10009374 pacid=23148884 polypeptide=Lus10009374 locus=Lus10009374.g ID=Lus10009374.BGIv1.0 annot-version=v1.0 ATGTGGGATTTGAACGACTCCCCAGATGATCGGAGAAAGGAGGAAGATAGCAGTTTCTACAAGGGGAAGAATTCGATGGTTGTCCCCGTCGGTGGATCCG TTTCCAATTCCAGCTCCTCCGCCGCCGCCGCTGACGGATCGGAGGATGAGGATGAAGATTTGGTGACTCGACAGTTCTTCCCGATGGACGCCGCTGTAGC CGGCGGCGGAGGAAGCGGTGAAATCGGGTTTCCTCGGTCTCACTGGATGGGGGTGAAGTTCTGTCAATCGGAATCTCCGGCATCGGCGGCGGCGGAGGTG GTTCAGCCGATGAAGAAGAGCAGGAGGGGACCAAGGTCGAGGAGCTCGCAGTACAGAGGCGTCACCTACTACCGGCGAACCGGCCGGTGGGAATCACATA TATGGGATTGCGGGAAGCAGGTTTATCTGGGTGGATTCGACACTGCACATGCAGCTGCGCGTGCATATGATAGAGCAGCGATTAAATTCAGAGGAGTGGA GGCTGATATTAATTTCACCATTGAAGACTATGAGGACGATCTCAAGCAGATGGGGAACTTGACGAAGGAGGAGTTTGTGCACGTGTTGCGACGACAGAGC ACGGGGTACCCGAGAGGGAGTTCCAAGTATCGGGGAGTCACTTTGCACAAGTGTGGCCGGTGGGAGGCTCGTATGGGTCAATTTCTCGGCAAAAAGTATG TCTATTTGGGATTGTTTGACACCGAGGTTGAGGCTGCAAGGGCTTACGACAAGGCCGCAATCAAATGCAATGGCAAGGATGCTGTGACGAATTTCGATCC AAGCATTTACGAAGATGAACCCGGCAACACCACCACCACCACCACAAACTCCCCTTCTGATCACAATCTTGATTTGAGTTTAGGGAATTCTGGTAATTCC CCTAGAGAGTCATTCAACAGCCCGAGAAGTACAGCCCCTCCCGGAGTCGATCCAAGGCGAAATCCGGGATTAAGACCTCAGCAGCTGATCAACCCTTATA GAAGTGATCAGAACCATGAAGATCAACAACAACAACAAAGAAGCAATGAGATGGAAGCAATTTCTACTTCATTCCACCACCCTAATCACCACCAACCTCC ACCTCATTTCAACTCTTTGAATTTTCAGCTTGGAAGCAGCAGTAGCAACAATGCAGGAGTCGGAGGAGGAGGAAGAATCGGCAGTGAACTTTCATTATCT CCAAGTGATTATCATCAACATCAACAATGGCAATCATCAATTCGAGCTAATAATACAAATCAAACTGCTTCTCCTCCAAATCAACAACAACAACAGATCA TGTTTGGAAGTGCAGCAGCTGCAGCATCATCAGGATTCCCAAATCATCAGATCCATAACAACACCAGAAATGGGTTCCATTACTCTCTCTTCAGACCCCC TTGA
AA sequence Show only first row Show all	>Lus10009374 pacid=23148884 polypeptide=Lus10009374 locus=Lus10009374.g ID=Lus10009374.BGIv1.0 annot-version=v1.0 MWDLNDSPDDRRKEEDSSFYKGKNSMVVPVGGSVSNSSSSAAAADGSEDEDEDLVTRQFFPMDAAVAGGGGSGEIGFPRSHWMGVKFCQSESPASAAAEV VQPMKKSRRGPRSRSSQYRGVTYYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFTIEDYEDDLKQMGNLTKEEFVHVLRRQS TGYPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKDAVTNFDPSIYEDEPGNTTTTTTNSPSDHNLDLSLGNSGNS PRESFNSPRSTAPPGVDPRRNPGLRPQQLINPYRSDQNHEDQQQQQRSNEMEAISTSFHHPNHHQPPPHFNSLNFQLGSSSSNNAGVGGGGRIGSELSLS PSDYHQHQQWQSSIRANNTNQTASPPNQQQQQIMFGSAAAAASSGFPNHQIHNNTRNGFHYSLFRPP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10009374 [exp]	0	1
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	8.4	0.8078
AT5G05080		ATUBC22, UBC22	ubiquitin-conjugating enzyme 2...		Lus10010432 [exp]	16.7	0.7825
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	17.0	0.7924
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	20.0	0.7923
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10038889 [exp]	22.8	0.8169
AT1G48170			unknown protein		Lus10011844 [exp]	24.5	0.7951
AT4G08310			unknown protein		Lus10003736 [exp]	28.6	0.8085
AT4G27870			Vacuolar iron transporter (VIT...		Lus10011838 [exp]	32.9	0.8097
AT5G56520			unknown protein		Lus10005700 [exp]	47.0	0.7709
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10041732 [exp]	53.9	0.7868

Compare expression of checked genes

Lus10009374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.