Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08230 414 / 1e-141 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 305 / 4e-99 Transmembrane amino acid transporter family protein (.1) AT5G40780 142 / 2e-37 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 130 / 6e-33 Transmembrane amino acid transporter family protein (.1) AT2G39890 119 / 5e-29 ATPROT1, ProT1 proline transporter 1 (.1.2) AT2G36590 113 / 4e-27 ATPROT3, ProT3 proline transporter 3 (.1) AT1G61270 110 / 3e-26 Transmembrane amino acid transporter family protein (.1) AT3G55740 109 / 4e-26 ATPROT2, ProT2 proline transporter 2 (.1.2) AT1G24400 107 / 4e-25 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G25530 105 / 3e-24 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038639 [exp] 441 / 3e-152 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 288 / 2e-92 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10037913 [exp] 285 / 9e-92 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10020537 [exp] 243 / 2e-70 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10038640 [exp] 223 / 3e-68 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10037914 [exp] 171 / 3e-48 AT1G08230 112 / 6e-31 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10001908 [exp] 137 / 1e-35 AT5G41800 369 / 3e-125 Transmembrane amino acid transporter family protein (.1) Lus10041580 [exp] 127 / 6e-32 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 122 / 5e-30 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G149900 [exp] 531 / 0 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 484 / 3e-169 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 455 / 8e-158 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 317 / 6e-104 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G138100 [exp] 311 / 2e-101 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G219300 [exp] 186 / 1e-53 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.010G128300 [exp] 119 / 3e-29 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.015G091600 [exp] 119 / 4e-29 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 118 / 8e-29 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G194600 [exp] 117 / 2e-28 AT2G39890 702 / 0.0 proline transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10009386 pacid=23142595 polypeptide=Lus10009386 locus=Lus10009386.g ID=Lus10009386.BGIv1.0 annot-version=v1.0 ATGTTCCGGTTCCGTGACATGGCCAACCGGATCCTTGGTCCTGGATGGGGCCGTTATTTTGTCGGCCCAATTCAGTTCATGGTTTGCTACGGCGCCGTTG TAGCTTGCATACTTCTTGGAGGCCAATGCATGAAGGCAATCTACCTATTGTCAAATCCTCATGGCACACTAAAGCTCTACCTATTCATAACAATCTTCGG TACCTTCATGCTCACGCTAGCCCAAATCCCATCTTTCCACTCCCTCCGCCACATCAATCTCATCTCCTTACTCCTCACTCTGGCCTACAGCGCATGCGCC ACAGCCGCCTCCGTCCACATTGGCCGCCGCCAGTCCTCCCCCGCCTCCCATTCCCTCCCCGGAGACAACACCCAAGACCGACTATTCGGAGTATTCAACG CCGTCGCCATCATCGCCACCACCTACGGCAATGGGATCATCCCTGAGATCCAGGCCACGGTGGCGCCGCCGGTGAAGGGGAAGATGTTTAAGGGGTTGTG CGTGTGTTACGCCGTCATCTTGGCGACGTTCTTTAGCGTGGCGATCTCTGGGTATTGGGCCTTCGGGAATGAGGCCCGCGGGCTTGTGCTTAGTAACTTT GTTGTCGACGGGAAGGCTCTTGTGCCGGAATGGTTTGTGTTGATGACTAATGTCTTCACCATTCTTCAGCTCTCCGCCGTCGCTGTGGTATACTTACAGC CGACCAACGAAGTACTAGAAAGCCTATTCGGCGACCCAAAGAGCAAACAATTCTCGACGCGCAACGTCGTCCCGAGGGTCTTGTCCCGGTCCGCGTCGGT AGTCCTCGCCACCACCGTGGCAGCGATGCTGCCGTTCTTCGGAGACATCAACGCTGTGATCGGAGCCTTTGGGTTCATCCCGCTGGATTTCATCTTGCCC GTTGTTTTCTATAACCTCACTTTCAAGCCTTCCAAGAGGAGTCTCGTTTTCTGGCTCAACTCCACCATCGCCGTTGTGTTTGCAGCCGTCGGGGCGATCT CCGCCGTTGCCGCCGTCAGGCAGATCGGGCTTGATGCCAAGACTTACCGGTTGTTTGCTAATATGGAATCCAGAAAAAGAGAGGTAAAGGTAAGCAAGCG GCGCCTTAAATCGGCTGCAAGAGGGAAAGATCACCGCTTCGAAACAGAAAGAGACAGATATCTCGAAGAAGAACAAGAATACGAAAATCTACAACTCCCA GACCGGTACTCTCCTGTTACGTACCCGGTTAGGACCTTTCTTCTAGACGATGACGAGTATGATGTCCCACCGCCCTCCTTTAAGTATAGGAATGTACTAG CTTCTCAACACATGACTTCCCCGCATTTATCTTTTCCGCACTTGACTTCTCCACACTTGGCTTCTCCACACTTGGCTTCTACAGGCTCGTCTCATGCTCC GTGA
AA sequence Show only first row Show all	>Lus10009386 pacid=23142595 polypeptide=Lus10009386 locus=Lus10009386.g ID=Lus10009386.BGIv1.0 annot-version=v1.0 MFRFRDMANRILGPGWGRYFVGPIQFMVCYGAVVACILLGGQCMKAIYLLSNPHGTLKLYLFITIFGTFMLTLAQIPSFHSLRHINLISLLLTLAYSACA TAASVHIGRRQSSPASHSLPGDNTQDRLFGVFNAVAIIATTYGNGIIPEIQATVAPPVKGKMFKGLCVCYAVILATFFSVAISGYWAFGNEARGLVLSNF VVDGKALVPEWFVLMTNVFTILQLSAVAVVYLQPTNEVLESLFGDPKSKQFSTRNVVPRVLSRSASVVLATTVAAMLPFFGDINAVIGAFGFIPLDFILP VVFYNLTFKPSKRSLVFWLNSTIAVVFAAVGAISAVAAVRQIGLDAKTYRLFANMESRKREVKVSKRRLKSAARGKDHRFETERDRYLEEEQEYENLQLP DRYSPVTYPVRTFLLDDDEYDVPPPSFKYRNVLASQHMTSPHLSFPHLTSPHLASPHLASTGSSHAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	1.0	0.9468
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	2.0	0.9118
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	2.8	0.8986
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	3.9	0.9010
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	10.0	0.8873
					Lus10023874 [exp]	11.5	0.8812
					Lus10000811 [exp]	14.6	0.8388
AT2G23450			Protein kinase superfamily pro...		Lus10019657 [exp]	15.5	0.8580
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002936 [exp]	17.5	0.8555
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	18.7	0.8908

Compare expression of checked genes

Lus10009386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.