Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27810 863 / 0 ATNAT12 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) AT4G38050 555 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 325 / 4e-105 Xanthine/uracil permease family protein (.1) AT2G05760 321 / 1e-103 Xanthine/uracil permease family protein (.1) AT1G60030 308 / 3e-98 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G62890 300 / 2e-95 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 291 / 4e-92 Xanthine/uracil permease family protein (.1) AT2G26510 279 / 3e-87 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G10540 276 / 4e-86 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 267 / 8e-83 Xanthine/uracil permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020551 [exp] 992 / 0 AT2G27810 891 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Lus10025716 [exp] 573 / 0 AT4G38050 824 / 0.0 Xanthine/uracil permease family protein (.1) Lus10035946 [exp] 569 / 0 AT4G38050 825 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 321 / 2e-103 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 314 / 8e-101 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10010707 [exp] 294 / 7e-93 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 293 / 1e-92 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10004228 [exp] 289 / 4e-91 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10002787 [exp] 285 / 2e-89 AT2G26510 748 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G148600 [exp] 916 / 0 AT2G27810 900 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.004G187900 [exp] 899 / 0 AT2G27810 880 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 12, nucleobase-ascorbate transporter 12 (.1.2.3) Potri.007G011400 [exp] 556 / 0 AT4G38050 834 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 328 / 4e-106 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 325 / 5e-105 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 324 / 9e-105 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.012G077400 [exp] 293 / 7e-93 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 293 / 1e-92 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.015G072600 [exp] 292 / 3e-92 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.014G035800 [exp] 290 / 3e-91 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10009401 pacid=23142617 polypeptide=Lus10009401 locus=Lus10009401.g ID=Lus10009401.BGIv1.0 annot-version=v1.0 ATGAAGTACGAGCTAAGGGATACGCCTGGGCTTGTTCCCATTGGTTTCTACGGGTTGCAGCATTACTTCTCAATGTTAGGATCGTTACTGTTGATTCCGC TTGTGATTGTTCCTGCAATGGGCGGCAGTCAAGAGGATACATCAATGGTGGTGTCGACAGTGCTGTTTATTTCAGGGGTGACCACTCTTCTGCATACCTC TTTTGGTTCGAGGTTGCCATTGATACAAGGCCCCTCGTTCGTCTATCTTGCACCGGCATTGGCAATAATCAACTCTCCAGAATTTCAAGGACTGAATGGA AATAATTTCAAGCATATCATGAAGCGGCTCCAGGGTGCCGTTATCATAGCTTCAGCCTTTCAGACAATACTTGGATACAGTGGCCTGATGTCTATAATTT TAAGATTGATCAATCCTGTAGTTGTTGCCCCAACAATAGCTGCTGTTGGGCTCTCTTTCTATAGCTACGGTTTCCCACTAGTTGGTACCTGTATCGAGAT CGGCGCTGTGCAAATATTACTCGTTATCTTATTTTCTCTGTACCTTCGGAAGATATCAGTATTTGGTCATCGCATTTTCCTTATCTACGCTGTTCCTCTG GCTCTTGGCATCACATGGGCATTTGCATTCCTTCTAACAGAAACAGGAGCCTACGATTACAAGGGTTGCAGTCCAATTATTCCTGCTTCGAATGTCATAT CCTCAAGCTGCAGAAAGCGCATATCAAGGGTGAAGAACTGTCGAGTCGACACTTCTCATGCATTGAGTTCTTCTCCATGGTTTAGGTTTCCTTATCCACT TCAATGGGGCACTCCAGTTTTTGACTGGAAAATGGCTCTACTTATGTGTGTGGTGTCCATCATCTCATCCGTGGATTCGGTCGGATCTTACCACGCATCG TCATTGCTGGTGGCGTCTAGGCCTCCAACGCGAGGCGTCCTTAGTCGGGGGATCGGTCTCGAAGGCCTCTCTAGCGTCCTGGCTGGCCTTTGGGGTACCG GAACCGGCTCTACGACTCTAACCGAAAATGTGCATACTCTTGCTGTGACGAAAATGGGCAGCCGGAGAGCAGTCGAGTTAGGCGCCTGTGTCTTGATCCT TCTATCGCTGATCGGCAAAGTCGGAGGGTTTATTGCATCAATTCCACAAGTCATGGTAGCAGCTCTACTCTGTTACATGTGGGCGATGCTAACCGCTTTG GGATTGTCGAATCTACGATACAGTGAGGCCGGAAGCTCCCGGAACATCATCATCGTTGGGCTATCCTTGTACTTCTCACTCTCCGTACCGGCATACTTCC AGCAATATGGCATCTCCCCAAATAGCAACTTGCCGGTTCCCAACTACTTCCAACCGTATATAGTCGCGTCCCATGGCCCGATCCGCACTAAATTTGGAGG GCTAAACTACTTCTTAAACACTCTGATCTCGCTCCACATGGTGATCGCGTTCGTCATGGCTGTAATCCTCGACAACACAGTGCCAGGAAGCCGGCTAGAG CGCGGGGTCTATGTCTGGTCCGATGCCGAAACGGCCAGGAGGGAGCCGGCCGTGACCAAGGACTACGAGTTGCCGTTCAGAGTCGGCCGGCTTTTCAGAT GGGTCAAATGGGTCGGAATGTGA
AA sequence Show only first row Show all	>Lus10009401 pacid=23142617 polypeptide=Lus10009401 locus=Lus10009401.g ID=Lus10009401.BGIv1.0 annot-version=v1.0 MKYELRDTPGLVPIGFYGLQHYFSMLGSLLLIPLVIVPAMGGSQEDTSMVVSTVLFISGVTTLLHTSFGSRLPLIQGPSFVYLAPALAIINSPEFQGLNG NNFKHIMKRLQGAVIIASAFQTILGYSGLMSIILRLINPVVVAPTIAAVGLSFYSYGFPLVGTCIEIGAVQILLVILFSLYLRKISVFGHRIFLIYAVPL ALGITWAFAFLLTETGAYDYKGCSPIIPASNVISSSCRKRISRVKNCRVDTSHALSSSPWFRFPYPLQWGTPVFDWKMALLMCVVSIISSVDSVGSYHAS SLLVASRPPTRGVLSRGIGLEGLSSVLAGLWGTGTGSTTLTENVHTLAVTKMGSRRAVELGACVLILLSLIGKVGGFIASIPQVMVAALLCYMWAMLTAL GLSNLRYSEAGSSRNIIIVGLSLYFSLSVPAYFQQYGISPNSNLPVPNYFQPYIVASHGPIRTKFGGLNYFLNTLISLHMVIAFVMAVILDNTVPGSRLE RGVYVWSDAETARREPAVTKDYELPFRVGRLFRWVKWVGM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009401 [exp]	0	1
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10009402 [exp]	1.0	0.9384
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10004508 [exp]	4.2	0.8739
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	5.9	0.8543
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10007341 [exp]	6.3	0.8750
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10035482 [exp]	8.4	0.8631
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	8.5	0.8364
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036127 [exp]	10.2	0.8398
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10038759 [exp]	11.7	0.8385
AT5G36930			Disease resistance protein (TI...		Lus10039850 [exp]	12.8	0.8107
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	13.4	0.8210

Compare expression of checked genes

Lus10009401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.