Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29680 552 / 0 CDC6, ATCDC6 cell division control 6 (.1.2) AT1G07270 538 / 0 Cell division control, Cdc6 (.1) AT4G14700 119 / 2e-28 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 110 / 2e-25 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011627 [exp] 862 / 0 AT2G29680 576 / 0.0 cell division control 6 (.1.2) Lus10000427 [exp] 213 / 4e-63 AT1G07270 150 / 1e-39 Cell division control, Cdc6 (.1) Lus10031848 [exp] 108 / 6e-25 AT4G14700 942 / 0.0 origin recognition complex 1 (.1) Lus10031279 [exp] 108 / 9e-25 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10031846 [exp] 108 / 1e-24 AT4G14700 943 / 0.0 origin recognition complex 1 (.1) Lus10000556 [exp] 92 / 6e-20 AT1G08630 536 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Lus10014658 [exp] 83 / 6e-17 AT1G08630 534 / 0.0 threonine aldolase 1 (.1.2.3.4.5) Lus10013372 [exp] 44 / 0.0004 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G250200 [exp] 652 / 0 AT1G07270 626 / 0.0 Cell division control, Cdc6 (.1) Potri.009G054300 [exp] 116 / 3e-27 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09079 [flax] [poplar] Cdc6_C CDC6, C terminal winged helix domain CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10009446 pacid=23149711 polypeptide=Lus10009446 locus=Lus10009446.g ID=Lus10009446.BGIv1.0 annot-version=v1.0 ATGCCGTCTCTCGCAGCCCTCACCGTTTCTGGACAAGAATCGTTAACCACGCCTCAGAAGCGGAGGCTGAGGTCCAGCTCCAACTCCTCGCCGGAGACTC CGATCTGTCTTCCGACGAAGCGGAAGTCTCCTCGCCGATGCGTCGATTCCAGTCCCAACGCTTGTGCAACGAGGAACGATTCAATTGAAGCGATTGAATC TATAGAGAAGGTGAGGGTATCGCCTGTTGAAGGATTATCGGGCGAGGTTTCCGAGAGGCCGAGTTGGAATCCTAGAGATACGGAGCAAGTGAGTGCGGTG AAGGAAGCGTTGCATGTGTCGACTGCTCCAGCTACGGTTGTGTGCCGAGAAGATGAACAGAGGAGAGTGTATGATTTCTGCAAGGAGAGTGTGGAGAAGG AACAGTCCGGGAGTTTGTATGTCTGTGGATGCCCCGGGACTGGGAAGTCTTTGTCAATGGAGAAAATGTCTAATCAGCTGATTCAGTGGTCTAGAGATGG TGGTGTTCAGTCTCCAGAAGTATTGTCCATCAACTGTACCACGCTTACGAGCTCAACTCAGATTTTCAGCAAGATAGTTGATAAGGTATCGATGAAGACA AAGATCAATGGAACTACCACACCATTGCAGCATCTTCAGAAATTGTATTCTCAACTTCAGCAGTCGAAAATGCTGCTGATAATAGCTGATGAATTGGATT ACCTGATCACAAAAGACCGGGCTGTCCTTCATGATCTGTTCATGCTTACAACTTTGCCTTTCTCTAGATGTATATTGATAGGCATAGCTAATGCCATAGA CCTAGCAGATCGTTTTCTTCCAAAGCTCCAGTCATTGAACTGTAAACCCTTGGTTATAACATTTAAAGCTTATTCCAAAGATCAAATACTGAGAATCCTT CAAGAGAGACTCATGGCACTACCCCATGTAGTTTTCAACCCACAAGCTTTGGAGCTATGCGCCAGAAAAGTTGCAGCTGCATCAGGCGACATGAGGAAAG CGCTTTCCGTTTGTAGGACAGCAGTCGAGATTCTGGAATCTGAACTAAGAGACTCCTGCACTGGTAGCATGAACCCATCTCCTTTACTTGACAAGCAAGA AAACTCAGTTGTGAAGGTTGATCACATGGCGGCTGCTCTATCAAAAGCGTTTGCATCTCCATTAGTGGACACAATTCAATCACTTCCTCATCATCAACAA ATTATCCTCTGCTCGGCAGTCAAGTTCTTCCGTGGAGGAAAGAAAGACACCGTACTCGGAGAGCTGAACAAATCGTACGTGGAGACTTGCAAGTCAAGAA AGATCCCACCAGTCGCCATTTCTGAATTCTTGAGTATGTGCAGAGTGCTTCATGACCAGGGACTAGTGAAGCTGGGACAGTCTCGCGGGGATGACAAATC GAAGAGGATAACACTAACAGTAGACCAAGCTGACATCTCCTTCGCATTGCAGGCTGTCCGTTTCTTTCGAAACTGTCTCCAGCAGTAA
AA sequence Show only first row Show all	>Lus10009446 pacid=23149711 polypeptide=Lus10009446 locus=Lus10009446.g ID=Lus10009446.BGIv1.0 annot-version=v1.0 MPSLAALTVSGQESLTTPQKRRLRSSSNSSPETPICLPTKRKSPRRCVDSSPNACATRNDSIEAIESIEKVRVSPVEGLSGEVSERPSWNPRDTEQVSAV KEALHVSTAPATVVCREDEQRRVYDFCKESVEKEQSGSLYVCGCPGTGKSLSMEKMSNQLIQWSRDGGVQSPEVLSINCTTLTSSTQIFSKIVDKVSMKT KINGTTTPLQHLQKLYSQLQQSKMLLIIADELDYLITKDRAVLHDLFMLTTLPFSRCILIGIANAIDLADRFLPKLQSLNCKPLVITFKAYSKDQILRIL QERLMALPHVVFNPQALELCARKVAAASGDMRKALSVCRTAVEILESELRDSCTGSMNPSPLLDKQENSVVKVDHMAAALSKAFASPLVDTIQSLPHHQQ IILCSAVKFFRGGKKDTVLGELNKSYVETCKSRKIPPVAISEFLSMCRVLHDQGLVKLGQSRGDDKSKRITLTVDQADISFALQAVRFFRNCLQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10009446 [exp]	0	1
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	1.0	0.9753
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	2.0	0.9598
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	3.2	0.9704
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009683 [exp]	4.5	0.9591
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	4.6	0.9547
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	5.7	0.9615
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	6.3	0.9538
AT2G24490		ATRPA32A, RPA2,...	SUPPRESSOR OF ROS1, replicon p...		Lus10020154 [exp]	7.5	0.9460
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	7.7	0.9576
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10009444 [exp]	7.7	0.9447

Compare expression of checked genes

Lus10009446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.