Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09460 276 / 6e-94 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G38620 261 / 4e-87 MYB AtMYB4 myb domain protein 4 (.1) AT1G22640 256 / 1e-85 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT2G16720 252 / 7e-84 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G34990 250 / 4e-83 MYB ATMYB32 myb domain protein 32 (.1) AT1G35515 246 / 2e-82 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT5G16770 220 / 2e-70 MYB ATMYB9 myb domain protein 9 (.1.2) AT3G02940 217 / 2e-69 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 212 / 3e-67 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT4G28110 208 / 2e-66 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001548 [exp] 451 / 3e-162 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 330 / 2e-114 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 327 / 3e-113 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10033473 [exp] 238 / 1e-78 AT2G16720 249 / 2e-83 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10028435 [exp] 236 / 2e-78 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10014129 [exp] 249 / 2e-77 AT4G38620 284 / 5e-90 myb domain protein 4 (.1) Lus10041888 [exp] 234 / 2e-77 AT4G38620 245 / 5e-82 myb domain protein 4 (.1) Lus10018418 [exp] 213 / 1e-67 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 209 / 5e-66 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081500 [exp] 283 / 2e-95 AT1G22640 277 / 1e-93 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.013G109300 [exp] 282 / 5e-95 AT4G09460 262 / 9e-88 myb domain protein 6 (.1) Potri.004G174400 [exp] 263 / 3e-88 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.009G134000 [exp] 261 / 1e-87 AT4G38620 305 / 2e-104 myb domain protein 4 (.1) Potri.005G112000 [exp] 257 / 4e-86 AT4G38620 277 / 5e-94 myb domain protein 4 (.1) Potri.T011525 [exp] 258 / 3e-85 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.T011400 [exp] 258 / 3e-85 AT4G38620 257 / 5e-85 myb domain protein 4 (.1) Potri.004G138000 [exp] 254 / 6e-84 AT4G38620 257 / 8e-85 myb domain protein 4 (.1) Potri.010G114000 [exp] 239 / 2e-79 AT4G38620 243 / 6e-81 myb domain protein 4 (.1) Potri.004G088100 [exp] 223 / 7e-73 AT4G09460 227 / 5e-75 myb domain protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009448 pacid=23149698 polypeptide=Lus10009448 locus=Lus10009448.g ID=Lus10009448.BGIv1.0 annot-version=v1.0 ATGGGAAGGTCTCCTTGCTGCGAGAAAGCTCACACCAACAAAGGCGCCTGGACGAAAGAAGAGGATCAGCGGCTGATCGATTACATCCGCTCCCATGGCG AAGGTTGCTGGCGATCCCTCCCCAAATCCGCCGGGCTGCTTCGATGCGGGAAGAGTTGCAGACTGAGATGGATTAATTACTTGAGGCCCGATCTGAAGAG AGGAAATTTCACTGAATCGGAGGATGATTTAATTGTTAAGCTCCATAGCTTGCTCGGAAACAAATGGTCTTTGATTGCTGGGAGATTACCGGGACGAACT GATAACGAGATCAAGAATTACTGGAATACCCACATCAAGAGGAAGCTTCTCAGCCTCGGAATTGACCCACAGACTCACCGTCCGCTCAATGAGAAACTCT CCGCCGGAGCTGCGGATTCGGTCCAGTTGAACCGGGTGATCAAGACCAACGGTGTGTTGGATTTCCAATTCCAGACGGTGAAAGCAGAGTCCGGTGAGGA GAATAACTGCTCCAGCAGTGGGATGACCACCGATGACGAGCCGTCGCCACCGCCGGCGGCAGCGGCGAAGGCGGTGGAGGAGGTGGATTTGAATTTGGAG CTGACGATTGGAGTGGGTTCTTCTTCTTCTCCTCCTGATCTACCGGCTAACTCGGGGAATTCGGCGGATTCAAAGGCTCGGTTTCGGCCTGTGTTTCGGC TTTGTGGTGGTGCGGTGGTGGAGGAGGAGGTGTGTTTATGTTGGCAATTGGGGGTTCAGGAAGGAAGTGGCGGGGGCTGCCGGTGCCGGTTTGCCGGCGG GAGGCAGAGTAGATATCAGTGA
AA sequence Show only first row Show all	>Lus10009448 pacid=23149698 polypeptide=Lus10009448 locus=Lus10009448.g ID=Lus10009448.BGIv1.0 annot-version=v1.0 MGRSPCCEKAHTNKGAWTKEEDQRLIDYIRSHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDLKRGNFTESEDDLIVKLHSLLGNKWSLIAGRLPGRT DNEIKNYWNTHIKRKLLSLGIDPQTHRPLNEKLSAGAADSVQLNRVIKTNGVLDFQFQTVKAESGEENNCSSSGMTTDDEPSPPPAAAAKAVEEVDLNLE LTIGVGSSSSPPDLPANSGNSADSKARFRPVFRLCGGAVVEEEVCLCWQLGVQEGSGGGCRCRFAGGRQSRYQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10009448 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10006403 [exp]	1.4	0.8985
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10001548 [exp]	2.6	0.8409
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	7.2	0.8467
AT5G67290			FAD-dependent oxidoreductase f...		Lus10030334 [exp]	9.2	0.8210
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	12.8	0.8500
AT2G45170		ATATG8E	AUTOPHAGY 8E (.1.2)		Lus10004352 [exp]	15.2	0.8467
AT3G43660			Vacuolar iron transporter (VIT...		Lus10035086 [exp]	18.5	0.8202
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	23.6	0.8462
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	24.5	0.8230
AT3G09085			Protein of unknown function (D...		Lus10017182 [exp]	29.6	0.8024

Compare expression of checked genes

Lus10009448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.