Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08810 249 / 8e-82 MYB ATMYB60 myb domain protein 60 (.1.2) AT3G47600 244 / 2e-79 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT5G62470 243 / 8e-79 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT3G28910 241 / 2e-78 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT1G74650 236 / 3e-76 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT5G15310 192 / 2e-59 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G01140 188 / 5e-57 MYB NOK, ATMYB106 NOECK, myb domain protein 106 (.1) AT3G61250 186 / 6e-57 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT3G02940 184 / 3e-56 MYB ATMYB107 myb domain protein 107 (.1) AT2G31180 181 / 6e-56 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020343 [exp] 382 / 6e-134 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10002056 [exp] 245 / 9e-80 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10015369 [exp] 240 / 8e-78 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10042200 [exp] 238 / 2e-76 AT5G62470 330 / 2e-111 myb domain protein 96 (.1.2) Lus10008616 [exp] 236 / 2e-75 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10024218 [exp] 231 / 1e-74 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10030677 [exp] 230 / 4e-74 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10005245 [exp] 214 / 5e-68 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10033003 [exp] 192 / 3e-58 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067500 [exp] 255 / 9e-84 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.019G045900 [exp] 253 / 4e-83 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.017G082500 [exp] 245 / 6e-80 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.004G126700 [exp] 240 / 2e-77 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.017G086300 [exp] 195 / 1e-59 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.012G140700 [exp] 191 / 3e-59 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.019G118200 [exp] 191 / 3e-58 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.013G148600 [exp] 189 / 1e-57 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.004G033100 [exp] 188 / 6e-57 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.015G143500 [exp] 185 / 6e-57 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009522 pacid=23145687 polypeptide=Lus10009522 locus=Lus10009522.g ID=Lus10009522.BGIv1.0 annot-version=v1.0 ATGGGAAGGCCACCGTGTTGTGACAAAGTTGGAATCAAGAAAGGTCCATGGACACCTGAGGAAGACATCATCTTGGTCTCTTACATCCAAGAACATGGCC CTGGCAATTGGAGATCAGTCCCCACCAACACGGGGCTGATGAGATGCAGCAAGAGTTGCAGGCTGAGGTGGACAAACTACTTGAGGCCGGGGATCAAGAG AGGCAACTTCACACCTCATGAAGAACGCATGATCGTTCACTTGCAGGCTTTATTGGGTAACAAATGGGCAGCCATAGCTTCATACCTGCCGCAGAGAACA GACAACGACATAAAGAACTACTGGAACACACACTTGAAGAAGAAGCTCAAGAACAAGTCGACATCAGTTCTTCCACTGACTGATGATTCGTCATCATCAC CGCCATTGATGAGCTTCAGTACTACCAGAGTTGTAGATTTAGTAGATCATACCACATCACATTTCATCCCTCCTATTAGTACTAGTACTAGTACTAATAC TAACACTGGTACTAGTTCTCTGCCGCGGCTTGCTGCCTCCACCTCTTCTATGTACGCTTCGAGCACGGAGAACATTTCGCGACTCCTTAGCGTGTGGATG AGGAAACCATCGGAACAAAACCTCACCAACAACAACAATGTTGATATTGGGAATCATGACGAGTTGGAGTCGATTCTGTCTTTCGAGAATCTGAACGAGG AAATGAGCAACAACCGCATCAAGGATGAAGATCATGATGACGAAGAAATTGAGGAGAATGAAGAGGAAATGAAGCGGGAGACGAAGGTTGCTTGCGCTTC AAGCAGCCTTCTTCCTCCTCCGCCGCCACCTCCATTGTCTTTCCTTGAGAAGTGGCTTCTGGATGAGAGTGGTGGTGGTGTTCAAGGTGAAGAATCAATG GAGATCTCTTCCATTTTCTGA
AA sequence Show only first row Show all	>Lus10009522 pacid=23145687 polypeptide=Lus10009522 locus=Lus10009522.g ID=Lus10009522.BGIv1.0 annot-version=v1.0 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTPHEERMIVHLQALLGNKWAAIASYLPQRT DNDIKNYWNTHLKKKLKNKSTSVLPLTDDSSSSPPLMSFSTTRVVDLVDHTTSHFIPPISTSTSTNTNTGTSSLPRLAASTSSMYASSTENISRLLSVWM RKPSEQNLTNNNNVDIGNHDELESILSFENLNEEMSNNRIKDEDHDDEEIEENEEEMKRETKVACASSSLLPPPPPPPLSFLEKWLLDESGGGVQGEESM EISSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	1.4	0.9575
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10038857 [exp]	2.8	0.9252
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10000754 [exp]	4.0	0.8934
AT5G25840			Protein of unknown function (D...		Lus10037569 [exp]	4.2	0.8866
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	4.6	0.8986
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	5.7	0.9096
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	6.0	0.9010
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10006249 [exp]	6.0	0.9172
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	6.7	0.9040
AT1G74875			unknown protein		Lus10023768 [exp]	6.7	0.8788

Compare expression of checked genes

Lus10009522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.