Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39830 749 / 0 Cupredoxin superfamily protein (.1) AT5G21100 570 / 0 Plant L-ascorbate oxidase (.1) AT5G21105 563 / 0 Plant L-ascorbate oxidase (.1.2.3) AT5G05390 283 / 3e-88 LAC12 laccase 12 (.1) AT5G03260 273 / 2e-84 LAC11 laccase 11 (.1) AT2G30210 272 / 1e-83 LAC3 laccase 3 (.1) AT3G09220 258 / 1e-78 LAC7 laccase 7 (.1) AT2G40370 258 / 2e-78 LAC5 laccase 5 (.1) AT1G18140 256 / 1e-77 LAC1, ATLAC1 laccase 1 (.1) AT5G09360 255 / 2e-77 LAC14 laccase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000871 [exp] 1085 / 0 AT4G39830 756 / 0.0 Cupredoxin superfamily protein (.1) Lus10022504 [exp] 773 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10016808 [exp] 769 / 0 AT4G39830 824 / 0.0 Cupredoxin superfamily protein (.1) Lus10025538 [exp] 572 / 0 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10026753 [exp] 567 / 0 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10036957 [exp] 298 / 2e-99 AT4G39830 213 / 3e-67 Cupredoxin superfamily protein (.1) Lus10023189 [exp] 290 / 1e-90 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10026512 [exp] 289 / 2e-90 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 285 / 9e-89 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171700 [exp] 843 / 0 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088222 [exp] 783 / 0 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 773 / 0 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 773 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 661 / 0 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.009G159700 [exp] 570 / 0 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.001G219300 [exp] 568 / 0 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.007G088290 [exp] 323 / 9e-108 AT4G39830 363 / 1e-123 Cupredoxin superfamily protein (.1) Potri.010G193100 [exp] 283 / 2e-88 AT2G38080 771 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.008G073700 [exp] 281 / 2e-87 AT2G40370 946 / 0.0 laccase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10009603 pacid=23140095 polypeptide=Lus10009603 locus=Lus10009603.g ID=Lus10009603.BGIv1.0 annot-version=v1.0 ATGAAGCTAGTACTGCTTCTGCTACTTGTCTCGTTTTTGCTTAGCAATGATGACAAACTAGTGATCGAAGCCAAAACCCACCTCCACAAATGGGACGTGA GATACGAGTACAAGTCGCCCGATTGCTACAAGAAGCTATCTATGACCATCAACGGCATGACCCCAGGACCAACAATCCGCGCCCAACAAGGAGACACAAT CGTCGTGATCGTCACCAACGGATTAGGCACCGAGAATGTCGCCATTCACTGGCATGGCATCCGCCAGTTCGGCACCCCTTGGAGCGATGGCGCCGAAGGG GTCACGCAATGTCCCGTCCTACCTGATGAATCGTTCACTTATAGATTCGTTGTAGACAAGGCGGGGACGTTCATGTACCATGGTCATTACGGGATGCAGA GGTCGGCCGGGCTCAATGGGATGATTATTGTTTCTCCGAGGCTTGGCCCGGTTGAACCATTCTCGTATGACCATGATCGGACAATGTTGTTGACCGATTG GTACCATGCGTCGACTTTTGAGCAGGCTGCTGGTCTTTCGTCTGTCCCCTTTATTTTCGTCGGGGAGCCACAGTCGCTTCTAATAAACGGGAGAGGGAAA TACAACTGCTCTCAAGTGGCGCCGGCGACGAACGGATCAACCAGCGTTTGCGATCCGACGAACCCGAGCTGCAATCCGTTTACCCTAACTGTCATTCCGA GGAAGACTTATCGCATCAGGATCGGCAGCTTAACTTCTATATCTACTCTTAGTTTCCAGATCGAGGGTCACAAGATGACCGTGGTTGAAGCCGACGGGAA CTACGTGGAACCATTCGAGACGGAGAACCTCTACGTCTACTCCGGCGAGACCTACTCCGTGTTAGTAAAAGCTGATCAGTCTCCGACGAGGAATTACTGG ATCACCACGAGCGTCGTCGCTCGGAAACCTTCAACTCCGGAGGGGATCGCAATTCTCAACTACTACCCGAACCACCCACGGGGTCGTCCTCATACGCTCC CGCCGGCTGGACCTCAATGGAACGACACCGGTTCACGCCTGGAGCAGAGTCGGGCATTTAAGGCCCGGAAGGGCTACGTCCACGAACCGCCTCCGAAACC GGACCGGGTCATCCAGCTACTCAACACACAGAACAAGATTGGCGGGAAATTCAAATGGGCGTTAAACAATCTCTCCTTTGCCCTCCCAACGACTCCTTAC TTGGTCGCCCTGAAGAGAAACCTCAAGGGCGTTTTCGATCAGGAACCGCCTCCGGAGAAGCTCGATATGTCGAATTACGACATTTACAGCGTGGCGAAGA ACGTGAATGCCACGCTAAGCAACCGAATTTACAGGCTAGAGTTCAATTCAACGGTGGACGTGGTGTTACAGAATGCCAACACCATGACACCTAACAACAG TGAGGCGCACCCTTGGCATCTCCATGGTCATGATTTTTGGGTGCTCGCGTATGGGGAAGGGAAGTATGACCCGACCCGGGATATGGAGCGGTATAACCTT GTAGATCCGGTGATGAAGAATACAGTGCCGCTTCATCCTTATGGGTGGACTGCGATTCGGTTCAGGGCGGATAACCCGGGTGTGTGGTTCTTCCATTGCC ACATTGAGTCTCATTTCTTCATGGGGATGGCTTTGGTTTTCGAAGAAGGGAGTTGGATGGTTGGACGGCTGCCTTCTTCGGTTATGGGATGTGGGAAAAC CAAACCGGTTTGA
AA sequence Show only first row Show all	>Lus10009603 pacid=23140095 polypeptide=Lus10009603 locus=Lus10009603.g ID=Lus10009603.BGIv1.0 annot-version=v1.0 MKLVLLLLLVSFLLSNDDKLVIEAKTHLHKWDVRYEYKSPDCYKKLSMTINGMTPGPTIRAQQGDTIVVIVTNGLGTENVAIHWHGIRQFGTPWSDGAEG VTQCPVLPDESFTYRFVVDKAGTFMYHGHYGMQRSAGLNGMIIVSPRLGPVEPFSYDHDRTMLLTDWYHASTFEQAAGLSSVPFIFVGEPQSLLINGRGK YNCSQVAPATNGSTSVCDPTNPSCNPFTLTVIPRKTYRIRIGSLTSISTLSFQIEGHKMTVVEADGNYVEPFETENLYVYSGETYSVLVKADQSPTRNYW ITTSVVARKPSTPEGIAILNYYPNHPRGRPHTLPPAGPQWNDTGSRLEQSRAFKARKGYVHEPPPKPDRVIQLLNTQNKIGGKFKWALNNLSFALPTTPY LVALKRNLKGVFDQEPPPEKLDMSNYDIYSVAKNVNATLSNRIYRLEFNSTVDVVLQNANTMTPNNSEAHPWHLHGHDFWVLAYGEGKYDPTRDMERYNL VDPVMKNTVPLHPYGWTAIRFRADNPGVWFFHCHIESHFFMGMALVFEEGSWMVGRLPSSVMGCGKTKPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39830			Cupredoxin superfamily protein...		Lus10009603 [exp]	0	1
AT3G08990			Yippee family putative zinc-bi...		Lus10004823 [exp]	1.0	0.9995
					Lus10009892 [exp]	2.0	0.9968
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10002831 [exp]	3.5	0.9955
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024260 [exp]	4.0	0.9928
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10018220 [exp]	4.2	0.9673
AT5G39160			RmlC-like cupins superfamily p...		Lus10034254 [exp]	4.5	0.9928
AT1G13680			PLC-like phosphodiesterases su...		Lus10000649 [exp]	4.6	0.9826
AT2G23945			Eukaryotic aspartyl protease f...		Lus10031113 [exp]	4.9	0.9900
AT5G44390			FAD-binding Berberine family p...		Lus10042382 [exp]	6.3	0.9653
					Lus10019151 [exp]	8.0	0.9756

Compare expression of checked genes

Lus10009603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.