Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18590 145 / 2e-44 AtENODL5 early nodulin-like protein 5 (.1) AT1G48940 143 / 1e-43 AtENODL6 early nodulin-like protein 6 (.1) AT5G14345 109 / 7e-31 AtENODL21 early nodulin-like protein 21 (.1) AT1G79800 102 / 2e-27 AtENODL7 early nodulin-like protein 7 (.1) AT4G31840 101 / 4e-27 AtENODL15 early nodulin-like protein 15 (.1) AT4G28365 99 / 5e-26 AtENODL3 early nodulin-like protein 3 (.1) AT2G25060 97 / 1e-25 AtENODL14 early nodulin-like protein 14 (.1) AT4G32490 98 / 3e-25 AtENODL4 early nodulin-like protein 4 (.1) AT5G57920 92 / 1e-23 AtENODL10 early nodulin-like protein 10 (.1) AT4G30590 88 / 7e-22 AtENODL12 early nodulin-like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022318 [exp] 127 / 5e-37 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10032111 [exp] 122 / 2e-35 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10014880 [exp] 121 / 1e-34 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10026880 [exp] 96 / 1e-24 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10003432 [exp] 94 / 8e-24 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10022522 [exp] 88 / 7e-22 AT3G18590 95 / 2e-24 early nodulin-like protein 5 (.1) Lus10039852 [exp] 88 / 8e-22 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10018617 [exp] 87 / 4e-21 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10037575 [exp] 85 / 2e-20 AT1G79800 127 / 4e-37 early nodulin-like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G052000 [exp] 149 / 5e-46 AT1G48940 163 / 1e-51 early nodulin-like protein 6 (.1) Potri.001G338800 [exp] 137 / 2e-41 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.006G264600 [exp] 100 / 1e-26 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.006G184100 [exp] 99 / 4e-26 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.017G011200 [exp] 99 / 8e-26 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.001G187700 [exp] 97 / 1e-25 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1) Potri.018G018200 [exp] 97 / 2e-25 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.015G113300 [exp] 90 / 5e-23 AT5G14345 110 / 9e-32 early nodulin-like protein 21 (.1) Potri.003G050500 [exp] 86 / 5e-21 AT1G79800 162 / 1e-50 early nodulin-like protein 7 (.1) Potri.011G135400 [exp] 86 / 8e-21 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10009617 pacid=23140047 polypeptide=Lus10009617 locus=Lus10009617.g ID=Lus10009617.BGIv1.0 annot-version=v1.0 ATGCCGAAGATGATTAACAAACATAATATGATCCTACCAGCAAGTTTGATGATCATCCTCCTCTGTTTTTTCACCACCGGAGTAACCTCCAAGGAGCTGA TCGTCGGCGGGGAAGAAGGGTGGGCAGTTCCCAAGTCGAAAGACGAGCAGCAACGCCTCTTCTTCTTCAACGACTGGGCTTCCTCCAACCGATTCCAACT CAACGACACTCTCAGGTTCAAGTACCAGAAGGACTCGGTGATGGTGGTGGCGGAGGAAGAGGAATACAACAAGTGCAGGAGCTCGCACCCTGTCGTCTAC TTCAACGACGGTGACACTTCGTTTGCGTTGGATCGGCCTGGATTGTTCTACTTCATTAGTGGCGTCACTGGACATTGTGAACGTGGGTTGAAGATGACTG TTAAGGTGCTTGACGTGGATAATTACGCCGGTGACGGTGATGCTCCGAGTGGTCAGCCGGACGATGGTCGTGAAGAGAAGTCGTCGGCAGGGGCGTCCTC TGCTGAGTACTCTGCTGCCTCCATTGCTGCTGCTGCTCTGCTTGCATTGTCTTTGTTGTTTTGA
AA sequence Show only first row Show all	>Lus10009617 pacid=23140047 polypeptide=Lus10009617 locus=Lus10009617.g ID=Lus10009617.BGIv1.0 annot-version=v1.0 MPKMINKHNMILPASLMIILLCFFTTGVTSKELIVGGEEGWAVPKSKDEQQRLFFFNDWASSNRFQLNDTLRFKYQKDSVMVVAEEEEYNKCRSSHPVVY FNDGDTSFALDRPGLFYFISGVTGHCERGLKMTVKVLDVDNYAGDGDAPSGQPDDGREEKSSAGASSAEYSAASIAAAALLALSLLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10009617 [exp]	0	1
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10025104 [exp]	1.0	0.9877
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10022760 [exp]	3.5	0.9272
AT5G10380		ATRING1, RING1	RING/U-box superfamily protein...		Lus10029456 [exp]	12.9	0.7391
					Lus10034328 [exp]	13.0	0.9348
AT5G19580			glyoxal oxidase-related protei...		Lus10012979 [exp]	15.6	0.8177
AT5G40960			Protein of unknown function (D...		Lus10032031 [exp]	17.8	0.8460
AT1G34580			Major facilitator superfamily ...		Lus10020934 [exp]	17.9	0.7430
					Lus10009393 [exp]	19.7	0.9153
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10027584 [exp]	21.7	0.8916
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10040310 [exp]	22.2	0.9127

Compare expression of checked genes

Lus10009617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.