Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18100 464 / 3e-152 MYB ATMYB4R1 myb domain protein 4r1 (.1.2.3) AT5G11510 130 / 6e-31 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT3G09370 127 / 1e-30 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT4G32730 124 / 6e-29 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G02320 122 / 9e-29 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT4G00540 110 / 2e-25 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT1G17950 94 / 4e-21 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT5G17800 94 / 2e-20 MYB ATMYB56 myb domain protein 56 (.1) AT1G26780 93 / 2e-20 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT1G73410 91 / 4e-20 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009008 [exp] 1169 / 0 AT3G18100 444 / 6e-143 myb domain protein 4r1 (.1.2.3) Lus10011687 [exp] 130 / 2e-30 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 129 / 3e-30 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10008010 [exp] 123 / 1e-29 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10025351 [exp] 119 / 8e-28 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10024394 [exp] 117 / 2e-27 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10038623 [exp] 109 / 5e-24 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10031326 [exp] 91 / 3e-19 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10031900 [exp] 91 / 4e-19 AT1G17950 220 / 2e-70 myb domain protein 52 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041500 [exp] 592 / 0 AT3G18100 627 / 0.0 myb domain protein 4r1 (.1.2.3) Potri.006G241700 [exp] 129 / 4e-30 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.003G123800 [exp] 123 / 1e-29 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.018G038000 [exp] 125 / 3e-29 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G085600 [exp] 119 / 1e-27 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.014G079300 [exp] 115 / 2e-26 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.008G088000 [exp] 95 / 3e-20 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.012G039400 [exp] 91 / 5e-20 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.017G085200 [exp] 93 / 1e-19 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.019G040900 [exp] 92 / 2e-19 AT1G26780 211 / 4e-66 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009636 pacid=23140090 polypeptide=Lus10009636 locus=Lus10009636.g ID=Lus10009636.BGIv1.0 annot-version=v1.0 ATGCGGACTCCGGAAGCGGAAAACGGGGGAGGGCTCTCCGAACTCACCAGCGACGATGAAGAAGACCTCAACGATGCATTGTTCAATGACATTGAAGCTC TCAGGCAAGTATGCTTGAAAACCGGCAACAATCTCGGCGACACAGTCAACTTCTGCGACGACGACGACGATAACGACGATGGTCCTTCCACTTCCGGGCG AGTAGTCGATTCCGATAGCGATGAAGACGATTTGGAAATTCTCCGGAGCATTCAGCAGCGGTTTATGAAGTCGGGTAAGAATTACCAGGCTCTCTCGCCC AAGCCTCTGTGCTCGATCCATCCCGATACGGACGACGACGACGGAGAGGATGATATAGAGATGTTGGTCTCTCTTCAGAGGCGTTTCGGGAAGAATGATG CAAATGGAGGGGAAATTCGGAGTAAGAGATTCGAAGAGGAGCAGACTTCAATTGTCACTTCAGAGGCGAAAGTTGCTGACGAACAATTGGTGGGTAAAAC TAATGCTTTTCGAGTGGTTGAGGATATTGAAGACACTGCTAATAACACCGCCAATTTGTTGAGTGATAGCATCGAGATGCAACCTGCTGGCTCCGTCCAT GAATCTGCTTCTTGCCAGTCATCAAAATCTTTCATAAACCAAGAGGCTTCTCAGATGATTTTTGGCGCCATTAAGAAAAACAGGTCGCTCCAGAACTTTA TTCGGACAAAAATGTCTCAGATTAAGGCCAGACTGGAGGAGAACAACGACTTGAGGAAGCGTGTTAAAATCCTGAAGGATCTTCAGGTTTCATGTAGGCA AAATACTGGTCGTAGTTTTGCCCAGGGGAAGAATCCTCGAATCCAGTTGATATCAGCACTATCTAGCATCAGCTCCAAGGATGCCAAGGGGAAGAATGTA AAGTTGTCTCCGATATGCAGTGGCCCAGAGGAGAATTCTCACGTTCCTAACTATAGGGAAGCGTTGGTGAAATTCCCCATATCATTGGAACGAAGAAAAT GGGAAAAGTCTGAAGATAAAAAACTGAAGGAGGGGTTAAAGCAGCAATTTCAAGAATTGCTGTTTATGGAAGCTACGGACCAATTCAGTTCTTTAGGACA TGATGGTGACACAGATAGCATCATTAAGTCTGTCGAAAATCTGGAGATTACACCTGAGATAATGAAAAAATTTCTGCACAAGGTTGATTGGAATATGGTT GCCTCCAGGTTTGTGGAGGGTCGCTCAGGTCCAGAATGTCAAGCACGGTGGTTAAATTCGGCATGCCCAGATATCAATAACAGTGGATGGACTAGACAAG AGGAGAAGCTTCTATTGTATTACGTTCAGAGCAAGGGGATTCACAATTGGTCTGAGATTGCTTCGTTGTTGAGGAAGAATAGAACTCCGTTTCAGTGCTT GGAACGTTACCAAAGGAGCTTGAACTCTTGTGTTCTGAACAAGGAGTGGACAAAGGAAGAAGACGCCCAACTTAAGTCTGCTGTTCGTAAATTCGGTGAG AGTGACTGGCAGTCTGTGGCCACAACTCTGAGAGGACGAACCGGTGCTCAGTGCTCTAACAGGTGGCTGAAAAGTCTCTGCGTATATGGTAAAGGGCATT GGAAAGCAGAAGAAGATAAACGCCTGAAATTGGCTGTGAAGTTTTTTGGTCCCAAGGATTGGAAGAGAGTTGCTTCATTCGTGCCAGGCCGGAAAGATGT ACAATGTCGCGAGAGATGGCATAATGCTTGCTCTCCTTCCCTGAATCGTGGTGCATGGACCGCCGAGGAAGATTCACGATTGAAGGCAGCAGTTGAAGAA CATGGTCATAGTTGGTCTAAAGTTTCTCATTACATTCCTGGTAGAACCGATAACGATTGCATGAGGAGGTGGAAGGTCCTATTCCCTAAGGAAGTGCCAT TACTTAAAGAAGCCAGAAAAATTCGGAACGCTGCCCTTATAACCAACTTTGTCGACCGCGAGGAAGAGCGCCCAGCACTTGGTTTAGAAGATTTCGTTAC GTCGCCGTTACTCGGGTTGTTACCTGAATCTGAAAAAGTGGATCAGTCTGGAAAATCGAGTAGGAAACGAAGCAATGCCGGAACGAAGACTAGACCGAAG AGAACGGTTAAACAAATGCAGTATTCTTTGCAGGCTGGCGGCAATGGTACTGCTGATGCAGGAGATGCTGAAAGCTGCGGCGGAAGTACTGCTGCTGGAA GGAAGAGAAGAACTGTGAATCGTCGACGAAGAATGAGGAAAGATCATGCTGAGCCACCTCGGGAACCGTCACCTGATTCCATCTGCTCTCCGTTGAGGAC AACGAAAGTATTGCTGGTCTACACTAGGAGGAAAAAGGGGCTCGATCTGAAGAACTCTCGCCTGAATCTGAGCAAAGAAGCAAATAGCAGTACTGGGAAA GATGTCGAGGCACCATCATCCTTTAATGAAGTTTCGAAGAAAGGGATCGGGGCTCTTGGACCTCATCACAGACACGAAAAGGATTCACATCACGTGCAAG GACCCTGGGATAACACTACGCTTTCTTCCTTACGTACATCGAAGAAGAGGAAGAGGAAGCTCAAAATTGATGACCGTAGTAAAATCGTCGTTAAGGACAT TGGCGAGGCTAGTTATCCTCCCGACGATGCTCAAGCGACCTCTTATTCAGAAGCCACCATCTCTGCCGAATTGCAATGCCGAGAGACATCTAGCCACATG ACAATCTACAACAGAAGAAGTCCTCCCGGTTTGATTTCGGTTGATTCAAGGAAGCGTAAGAAGATTCATGGGCAGGCGCCAGTGAATCAGAAGAATGACG ACAGTAAGATCAATGATGCTGGCATTCTTCGAGCAACATCGCTCGATGCCTGTGAATCTGATGTGACCAGTTAG
AA sequence Show only first row Show all	>Lus10009636 pacid=23140090 polypeptide=Lus10009636 locus=Lus10009636.g ID=Lus10009636.BGIv1.0 annot-version=v1.0 MRTPEAENGGGLSELTSDDEEDLNDALFNDIEALRQVCLKTGNNLGDTVNFCDDDDDNDDGPSTSGRVVDSDSDEDDLEILRSIQQRFMKSGKNYQALSP KPLCSIHPDTDDDDGEDDIEMLVSLQRRFGKNDANGGEIRSKRFEEEQTSIVTSEAKVADEQLVGKTNAFRVVEDIEDTANNTANLLSDSIEMQPAGSVH ESASCQSSKSFINQEASQMIFGAIKKNRSLQNFIRTKMSQIKARLEENNDLRKRVKILKDLQVSCRQNTGRSFAQGKNPRIQLISALSSISSKDAKGKNV KLSPICSGPEENSHVPNYREALVKFPISLERRKWEKSEDKKLKEGLKQQFQELLFMEATDQFSSLGHDGDTDSIIKSVENLEITPEIMKKFLHKVDWNMV ASRFVEGRSGPECQARWLNSACPDINNSGWTRQEEKLLLYYVQSKGIHNWSEIASLLRKNRTPFQCLERYQRSLNSCVLNKEWTKEEDAQLKSAVRKFGE SDWQSVATTLRGRTGAQCSNRWLKSLCVYGKGHWKAEEDKRLKLAVKFFGPKDWKRVASFVPGRKDVQCRERWHNACSPSLNRGAWTAEEDSRLKAAVEE HGHSWSKVSHYIPGRTDNDCMRRWKVLFPKEVPLLKEARKIRNAALITNFVDREEERPALGLEDFVTSPLLGLLPESEKVDQSGKSSRKRSNAGTKTRPK RTVKQMQYSLQAGGNGTADAGDAESCGGSTAAGRKRRTVNRRRRMRKDHAEPPREPSPDSICSPLRTTKVLLVYTRRKKGLDLKNSRLNLSKEANSSTGK DVEAPSSFNEVSKKGIGALGPHHRHEKDSHHVQGPWDNTTLSSLRTSKKRKRKLKIDDRSKIVVKDIGEASYPPDDAQATSYSEATISAELQCRETSSHM TIYNRRSPPGLISVDSRKRKKIHGQAPVNQKNDDSKINDAGILRATSLDACESDVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009636 [exp]	0	1
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	4.2	0.8706
AT4G16100			Protein of unknown function (D...		Lus10016842 [exp]	6.9	0.8470
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10014370 [exp]	10.2	0.8630
AT3G61690			nucleotidyltransferases (.1)		Lus10030267 [exp]	10.8	0.8366
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	10.9	0.8663
AT2G48160			Tudor/PWWP/MBT domain-containi...		Lus10042690 [exp]	11.0	0.8488
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009008 [exp]	11.6	0.7618
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Lus10011182 [exp]	19.6	0.8581
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Lus10041301 [exp]	21.0	0.8409
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10037788 [exp]	24.4	0.8468

Compare expression of checked genes

Lus10009636 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.