Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT1G18140	800 / 0	LAC1, ATLAC1	laccase 1 (.1)
AT5G60020	583 / 0	LAC17, ATLAC17	laccase 17 (.1)
AT2G29130	579 / 0	LAC2, ATLAC2	laccase 2 (.1)
AT5G03260	548 / 0	LAC11	laccase 11 (.1)
AT2G38080	517 / 1e-178	ATLMCO4, IRX12, LAC4	LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
AT5G05390	499 / 1e-171	LAC12	laccase 12 (.1)
AT5G01190	495 / 5e-170	LAC10	laccase 10 (.1)
AT2G40370	489 / 2e-167	LAC5	laccase 5 (.1)
AT5G09360	485 / 4e-166	LAC14	laccase 14 (.1)
AT2G30210	478 / 5e-163	LAC3	laccase 3 (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10040936 [exp]	940 / 0	AT1G18140	790 / 0.0	laccase 1 (.1)
Lus10009827 [exp]	833 / 0	AT1G18140	696 / 0.0	laccase 1 (.1)
Lus10019122 [exp]	611 / 0	AT5G60020	938 / 0.0	laccase 17 (.1)
Lus10034439 [exp]	605 / 0	AT5G60020	943 / 0.0	laccase 17 (.1)
Lus10034614 [exp]	594 / 0	AT5G60020	934 / 0.0	laccase 17 (.1)
Lus10024378 [exp]	576 / 0	AT5G60020	853 / 0.0	laccase 17 (.1)
Lus10026512 [exp]	573 / 0	AT5G03260	919 / 0.0	laccase 11 (.1)
Lus10010850 [exp]	561 / 0	AT5G60020	856 / 0.0	laccase 17 (.1)
Lus10023189 [exp]	556 / 0	AT5G03260	930 / 0.0	laccase 11 (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.015G040400 [exp]	851 / 0	AT1G18140	840 / 0.0	laccase 1 (.1)
Potri.015G040600 [exp]	843 / 0	AT1G18140	840 / 0.0	laccase 1 (.1)
Potri.012G048900 [exp]	835 / 0	AT1G18140	858 / 0.0	laccase 1 (.1)
Potri.015G040700 [exp]	738 / 0	AT1G18140	726 / 0.0	laccase 1 (.1)
Potri.001G401300 [exp]	607 / 0	AT5G60020	904 / 0.0	laccase 17 (.1)
Potri.001G054600 [exp]	605 / 0	AT5G60020	905 / 0.0	laccase 17 (.1)
Potri.006G087500 [exp]	604 / 0	AT5G60020	806 / 0.0	laccase 17 (.1)
Potri.001G341600 [exp]	594 / 0	AT5G60020	896 / 0.0	laccase 17 (.1)
Potri.006G087100 [exp]	582 / 0	AT5G60020	802 / 0.0	laccase 17 (.1)
Potri.001G401100 [exp]	579 / 0	AT5G60020	881 / 0.0	laccase 17 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0026 [flax] [poplar]	CU_oxidase	PF00394 [flax] [poplar]	Cu-oxidase	Multicopper oxidase
CL0026 [flax] [poplar]	CU_oxidase	PF07731 [flax] [poplar]	Cu-oxidase_2	Multicopper oxidase
CL0026 [flax] [poplar]	CU_oxidase	PF07732 [flax] [poplar]	Cu-oxidase_3	Multicopper oxidase

Representative CDS sequence

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>Lus10009645 pacid=23140045 polypeptide=Lus10009645 locus=Lus10009645.g ID=Lus10009645.BGIv1.0 annot-version=v1.0

ATGGAGGGTTTCTATCGTCGACACCAACAACAGTTACTAACGTTAGCTCTTGTCGCAATAATCGTCGCTTCGTGGGCACAACCATGTTACAGCACGACAA

CCACTCGGCGCTTTCATTTCAATGTAGAGTGGAAGAAGGTGAGTCGTTTGTGTAAGACAAGACAGCTCCTTACGGTGAACGGAGAGTTCCCCGGCCCGAC

CATCGCCGTCAATGAAGGTGACCATGTTGAGATTAAGGTCACTAATGGAGTCTCCAAGAACACTACAATTCATTGGCATGGAGTAAGGCAAATAAGGACC

GGATGGGCAGACGGACCGGCTTATATAACACAGTGTCCGATTCAAGCAGGCGGGTCCTACATGTACAAGTTCACCGTAGCAGAACAAAGAGGGACTCTCC

TTTGGCATGCCCATTACGGTTGGCAAAGAGCATCCGTCTATGGTGCCTTCATAATCTACCCTAGATTGTCATACCCATTTTTGGTTCCGAATCAACCGAT

TCAGGCCGAAATCCCCATAATTTTCGGTGAGTGGTGGGATCGAGAAGAAGATGCGCTTGAGAAGGCAATGCTTTCAACTGGTGCAGGCCCAAGTATCTCC

CTTGCTTACACTATCAATGGACTTCCTGGCCCACTTTACCCTTGCTCAAATAAAGATACCTTCATGGCAACGGTTGAGTACGGCAAGACGTACATGCTTC

GAGTCATCAACGCAGCATTAGCCGATGAGCTATTTTTCTCCATATCCAAACACACCCTAACAGTAGTAGAAGTTGATGCGCTCTACACGAAGCCATTCGC

CACCGAGGCCATCATGATCGCTCCCGGCCAGACCACCACCCTCCTCATCACCGCTGACCAGGTCCCGGGACCCACCGGTGCATTTGTCATGGCCGCCACA

CCTTATGTCACATCGGTCTTCCCCTTCAACAACTCGACCACAATTGGGTTTTTGAGGTACAACGACAGTACTCGAACTCAAGACCTCTCTACGTTGTTGT

CTGGTGGCCATCATCATGTGGTGGGACCAGAGAACTTGCCTAAAATGGAAGACACGGATTTCACAATGAAATTTGCGGGCAAGATTAGGTCTCTGGGGTC

GAGGGAGTACCCGTGTGAAGTCCCGAAAAATATAGACAAGCGAGTGATCATCGCGATAAGTCTTAACCTCCAAGACTGTCCTCAGAACAAGACGTGTTCC

GGTTACCAAGGCAAGATGTTCTACGCCTCGATGAACAACCAATCGTTCGTCCGCCCTCCCACTTCCTTCCTCCAAACCCACTACCTGATCGGGTCGTCCG

ACCGGAATTCATCAAATCCCTTCCCCGAACGACCCCCAAACTCATTCAACTACACGGGCGGGGACCCGCAGACCACGAACCCCAACACGGAATTCGGGTC

AAAGATGATGGTCGTTCCCTACGGCACGAGAGTCGAGATCGTGCTGCAAGGAACGAACATCCTGAACGTGGAGAACCACCCGATCCACATCCACGGGCAC

AACTTCTTCATAGTGGGGACCGGGTTCGGGAACTTCAATGAGTCAAAGGACCCGAGCGAGTATAACCTGGTCGACCCGCCGTCGAGGAACACAATAGCAT

CGAGGAACACAAGAGCAGTTCCGAGCGGCGGTTGGGCCGCTATTCGGATCAACGCGGATAACCCGGGGGTTTGGTTTATACATTGCCACTTGGAGCCACA

CACCTCGTGGGGACTTGCCACTGGGTTTGTGGTGCAAGATGGCCCTTTGCCTTCTCAACGCTTGCTTCCTCCTCCTAACGATTTTCCAGCTTGCTAA

AA sequence

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>Lus10009645 pacid=23140045 polypeptide=Lus10009645 locus=Lus10009645.g ID=Lus10009645.BGIv1.0 annot-version=v1.0

MEGFYRRHQQQLLTLALVAIIVASWAQPCYSTTTTRRFHFNVEWKKVSRLCKTRQLLTVNGEFPGPTIAVNEGDHVEIKVTNGVSKNTTIHWHGVRQIRT

GWADGPAYITQCPIQAGGSYMYKFTVAEQRGTLLWHAHYGWQRASVYGAFIIYPRLSYPFLVPNQPIQAEIPIIFGEWWDREEDALEKAMLSTGAGPSIS

LAYTINGLPGPLYPCSNKDTFMATVEYGKTYMLRVINAALADELFFSISKHTLTVVEVDALYTKPFATEAIMIAPGQTTTLLITADQVPGPTGAFVMAAT

PYVTSVFPFNNSTTIGFLRYNDSTRTQDLSTLLSGGHHHVVGPENLPKMEDTDFTMKFAGKIRSLGSREYPCEVPKNIDKRVIIAISLNLQDCPQNKTCS

GYQGKMFYASMNNQSFVRPPTSFLQTHYLIGSSDRNSSNPFPERPPNSFNYTGGDPQTTNPNTEFGSKMMVVPYGTRVEIVLQGTNILNVENHPIHIHGH

NFFIVGTGFGNFNESKDPSEYNLVDPPSRNTIASRNTRAVPSGGWAAIRINADNPGVWFIHCHLEPHTSWGLATGFVVQDGPLPSQRLLPPPNDFPAC

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10009645 [exp]	0	1

Lus10009645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10009645 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10009645 coexpression network