Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 606 / 0 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT3G03450 229 / 5e-69 GRAS RGL2 RGA-like 2 (.1) AT5G17490 216 / 4e-64 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G04890 204 / 6e-61 GRAS SCL21 SCARECROW-like 21 (.1) AT5G48150 204 / 5e-60 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G14920 205 / 7e-60 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G50600 205 / 2e-59 GRAS SCL5 scarecrow-like 5 (.1) AT2G01570 204 / 2e-59 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G07530 164 / 7e-44 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT4G17230 159 / 4e-43 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022418 [exp] 853 / 0 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10024177 [exp] 579 / 0 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10039562 [exp] 577 / 0 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10019773 [exp] 531 / 0 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10034374 [exp] 273 / 4e-87 AT1G50420 279 / 2e-89 scarecrow-like 3 (.1) Lus10005078 [exp] 259 / 6e-82 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10016596 [exp] 222 / 3e-66 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036932 [exp] 211 / 2e-62 AT1G66350 258 / 1e-79 RGA-like 1 (.1) Lus10029592 [exp] 214 / 6e-62 AT1G63100 669 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G048700 [exp] 716 / 0 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.001G023500 [exp] 631 / 0 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.003G202100 [exp] 611 / 0 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.004G208700 [exp] 286 / 2e-92 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.015G091200 [exp] 235 / 2e-71 AT1G66350 256 / 4e-79 RGA-like 1 (.1) Potri.010G110700 [exp] 237 / 3e-71 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.012G093900 [exp] 230 / 1e-69 AT1G66350 257 / 2e-79 RGA-like 1 (.1) Potri.001G326000 [exp] 229 / 1e-67 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.004G089800 [exp] 223 / 3e-66 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G361700 [exp] 221 / 5e-66 AT1G50600 637 / 0.0 scarecrow-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10009717 pacid=23160098 polypeptide=Lus10009717 locus=Lus10009717.g ID=Lus10009717.BGIv1.0 annot-version=v1.0 ATGTTTCAAGACGATGGATCGTCCTCGGCCACGTCATCACCTCTCCAATACTTCTCCATGATGCCAATCTCCCCTAATCTTAATTCACCCTATCCATCAT GGTTGAGAGAGCTCAAATCCGAAGAGAGAGGGCTCTACTTGATCCATCTCTTGCTCACCTGTGCCAACCATGTAGCATCCGGCAGCCTTTCAAATGCAGA GATTGCCCTTTCCCAGATCTCCCAACTATCCGCACCAGATGGAGATACTATGCAGCGCATATCAGCCTATTTCACACAGGCACTTGCTGACAGGATCATT AAGTCCTGGCCTGGCGTTCACAGCGCCCTCAACGCTGCCAAATTAGCCATCCCTTCTGAGGAATTCCTGGTCAAGAAATATTTCTATGACATGTTCCCCT TCTTGAAAGTTGCATTTGTGCTCACCAACCAGGCCATAATGGATGCCATGGAAGGTGAAAAAATGGTTCATGTAATCGATCTTCACGCATCCGAATCTGC ACAGTGGATTGCGCTTCTCCAGAGTTTGAGCACTCGACAACCTGACGGTCCACCACATTTGAGGATTACAGGGATTCATCAGCAGAAGGAGGTTTTGGAT CGAATGAGTCGCGAACTAATCGAAGAAGCAGAAAGGTTAGACATTCCGTTTCAGTTCATACCAATTTTGAGCAGTTTGGAGAATCTTGATGTTGAGAAAT TGCGTGTCAAAACCGGTGAAGCACTGGCGATAAGCTCTGCTCTCCAGTTGCATCCTTTCCTTGCCTCTGATGATAGTAACGAATCCTCAAGGAAGCTATC GAACTCGAACTCTCATTTCCAGAGGCTGTTTCAGATGAGACAGCAAGGCACATTGGGGGAGTTGCTTGAGAAGGACATTGTTGTTGATGGGTACAGCCCG AGTTCTGATTCAGCTTCATCATCACCACTCTGTAATAGTAATTCGAAGATGGATAGCTTTCTTAATGTCCTGTGGAGTTTGTCGCCTAAGGTGATGGTGG TGACTGAGCAAGACTCGAACCATAATGGGGTGACGTTGATGGAGAGGCTACTAGAGGCACTCCATTCGTATGCGGCTTTGTTCGACTGTCTGGAATCGAA CATGCCAAGAACTTCAGTGGAAAGGCTGAAGGTGGAGAGGATGCTGTTTGGGGAGCAGATCAAGAACATTGTTGCTTGCGAGGGAAGCGAGAGGAAGGAA AGGCACGAGAAATTGGAGAAGTGGATTCAAAGGCTTGAAATTGCTGGGTTTGGTAATGTTGGTTTGAGCTATTATGGGATGTTGCAGGGTAAGAGATTGC TGCAGACTTATGGATGTGATGGTTATAGGATGAAGGAAGAGAATGGATGTGTAGTTATTGGATGGCAAGATAGGCCTCTTTTCTCCGTCTCAGCATGGAG GTGTAGGAAGTGA
AA sequence Show only first row Show all	>Lus10009717 pacid=23160098 polypeptide=Lus10009717 locus=Lus10009717.g ID=Lus10009717.BGIv1.0 annot-version=v1.0 MFQDDGSSSATSSPLQYFSMMPISPNLNSPYPSWLRELKSEERGLYLIHLLLTCANHVASGSLSNAEIALSQISQLSAPDGDTMQRISAYFTQALADRII KSWPGVHSALNAAKLAIPSEEFLVKKYFYDMFPFLKVAFVLTNQAIMDAMEGEKMVHVIDLHASESAQWIALLQSLSTRQPDGPPHLRITGIHQQKEVLD RMSRELIEEAERLDIPFQFIPILSSLENLDVEKLRVKTGEALAISSALQLHPFLASDDSNESSRKLSNSNSHFQRLFQMRQQGTLGELLEKDIVVDGYSP SSDSASSSPLCNSNSKMDSFLNVLWSLSPKVMVVTEQDSNHNGVTLMERLLEALHSYAALFDCLESNMPRTSVERLKVERMLFGEQIKNIVACEGSERKE RHEKLEKWIQRLEIAGFGNVGLSYYGMLQGKRLLQTYGCDGYRMKEENGCVVIGWQDRPLFSVSAWRCRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10009717 [exp]	0	1
AT3G48990			AMP-dependent synthetase and l...		Lus10027477 [exp]	2.2	0.9228
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	5.0	0.9092
AT3G25160			ER lumen protein retaining rec...		Lus10003146 [exp]	12.0	0.8988
AT3G01850			Aldolase-type TIM barrel famil...		Lus10035219 [exp]	12.8	0.9157
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034260 [exp]	16.2	0.8727
AT4G21580			oxidoreductase, zinc-binding d...		Lus10011233 [exp]	21.4	0.8927
AT2G15220			Plant basic secretory protein ...		Lus10019806 [exp]	21.5	0.8841
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	21.8	0.9146
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	23.6	0.8946
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10037552 [exp]	24.0	0.9046

Compare expression of checked genes

Lus10009717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.