Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60460 212 / 2e-67 MYB DUO1 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) AT5G06100 132 / 3e-35 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT4G26930 129 / 7e-35 MYB ATMYB97 myb domain protein 97 (.1) AT2G26960 130 / 8e-35 MYB ATMYB81 myb domain protein 81 (.1) AT3G11440 131 / 1e-34 MYB AtMYB65 myb domain protein 65 (.1) AT3G27810 125 / 1e-34 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT3G01530 124 / 2e-34 MYB ATMYB57 myb domain protein 57 (.1) AT5G65230 125 / 6e-34 MYB ATMYB53 myb domain protein 53 (.1) AT5G59780 123 / 7e-34 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT3G13890 125 / 1e-33 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040063 [exp] 130 / 9e-35 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 132 / 1e-34 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10026142 [exp] 132 / 2e-34 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10008685 [exp] 130 / 6e-34 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10036103 [exp] 129 / 6e-34 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10027189 [exp] 129 / 7e-34 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10035275 [exp] 128 / 3e-33 AT2G32460 233 / 5e-70 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10005886 [exp] 122 / 4e-33 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10026787 [exp] 126 / 5e-33 AT3G11440 301 / 4e-96 myb domain protein 65 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G054700 [exp] 209 / 4e-66 AT3G60460 266 / 3e-88 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) Potri.002G140900 [exp] 209 / 4e-66 AT3G60460 226 / 1e-72 DUO POLLEN 1, myb-like HTH transcriptional regulator family protein (.1) Potri.013G130900 [exp] 136 / 4e-36 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.002G228700 [exp] 131 / 8e-35 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.003G189700 [exp] 132 / 1e-34 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 131 / 1e-34 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.001G346600 [exp] 124 / 1e-34 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.017G071500 [exp] 122 / 5e-34 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.001G224500 [exp] 127 / 3e-33 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.001G235500 [exp] 122 / 3e-33 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009780 pacid=23175358 polypeptide=Lus10009780 locus=Lus10009780.g ID=Lus10009780.BGIv1.0 annot-version=v1.0 ATGGAAGTGAAGAACGAGGAAGTAAGGAAAGGGCCATGGAAAGCTGAGGAAGACCAAGTGCTTATTAACCATGTACACAAATACGGCCCTCGGGAATGGA GCTCCATTCGATCCAAAGGCCTTTTACAGCGCACCGGAAAGTCCTGTCGTCTCCGCTGGGTCAACAAACTCCGACCCAATTTGAAGAATGGATGCAAGTT CTCCGAGGAAGAACAGAGGATTGTGATCGAATTGCAGGCAAGGTTGGGGAACAAATGGGCCAAAATTGCTACCTATTTGGCTGGGAGGACTGATAACGAC GTCAAGAATTTTTGGAGCAGTCGGCAGAAGCGCCTTGCAAGACTCAACAACAACAACTCTTGTAATAATTCTTCAGCATCCAACTCCTCCAAGACTACAA AAAAGGCCAGGACTAAAATGAGTTCATCAACAATGGAAGAAGAGGAGGCGGAGGAAGAGAAAGAGGAGGAGGGGCCTTCGTCCTCGTCATCAAAGAAGGT GCAGTTATTATGTTCCTCCAACACTGAGGAGCCTATGAAGACGGTGCCATTATCTGTTCCAATTGTGAAGCCCGAGTTGGTTCCTGTGGAGTCGGAACCT GTGAATCCCTTCCCGCAGCCGCAGCCACCGGAACTGATAAGTTTCTCGCCGGAGAGCCAAGAGCTGTTGGCTAGACTTGAAGACCCTTTCTTCTTCAATG TATTTGGAATTCCTCAACTTGGAGATATACCGGAGCTTTCACTGGGCCCTCCATTATCTGACCACCCTCTTCCAAGCTGTATGACTGGAGGGATTGATGA TGACGATGACTTCCCTGCTGACTTGTTTGATCAAATCGACCGACTTCCAAGCCCCTCCCACTGGTAG
AA sequence Show only first row Show all	>Lus10009780 pacid=23175358 polypeptide=Lus10009780 locus=Lus10009780.g ID=Lus10009780.BGIv1.0 annot-version=v1.0 MEVKNEEVRKGPWKAEEDQVLINHVHKYGPREWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSEEEQRIVIELQARLGNKWAKIATYLAGRTDND VKNFWSSRQKRLARLNNNNSCNNSSASNSSKTTKKARTKMSSSTMEEEEAEEEKEEEGPSSSSSKKVQLLCSSNTEEPMKTVPLSVPIVKPELVPVESEP VNPFPQPQPPELISFSPESQELLARLEDPFFFNVFGIPQLGDIPELSLGPPLSDHPLPSCMTGGIDDDDDFPADLFDQIDRLPSPSHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60460	MYB	DUO1	DUO POLLEN 1, myb-like HTH tra...		Lus10009780 [exp]	0	1
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10040063 [exp]	1.0	0.9237
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	4.5	0.9090
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	7.2	0.8944
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10003972 [exp]	7.7	0.8864
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018547 [exp]	7.7	0.8716
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	8.5	0.8964
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	8.7	0.8693
AT3G03150			unknown protein		Lus10008759 [exp]	9.0	0.8115
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	10.2	0.8746
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	11.8	0.8887

Compare expression of checked genes

Lus10009780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.