Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04180 514 / 3e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58290 129 / 2e-32 RPT3 regulatory particle triple-A ATPase 3 (.1) AT2G27600 126 / 4e-31 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G09840 128 / 7e-31 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G53230 126 / 3e-30 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 126 / 3e-30 ATPase, AAA-type, CDC48 protein (.1) AT1G45000 119 / 7e-29 AAA-type ATPase family protein (.1.2) AT4G28000 122 / 8e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G24860 122 / 8e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02480 120 / 3e-28 AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040913 [exp] 726 / 0 AT4G04180 530 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004891 [exp] 127 / 1e-31 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10020589 [exp] 127 / 3e-31 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10021442 [exp] 128 / 9e-31 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 127 / 1e-30 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 127 / 1e-30 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 127 / 1e-30 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 126 / 3e-30 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10019537 [exp] 123 / 4e-30 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G004000 [exp] 620 / 0 AT4G04180 682 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G028000 [exp] 129 / 2e-32 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 127 / 9e-32 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.010G237100 [exp] 127 / 1e-31 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 127 / 1e-31 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.015G080600 [exp] 129 / 2e-31 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 129 / 3e-31 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 129 / 5e-31 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.004G184500 [exp] 125 / 5e-31 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.017G108200 [exp] 128 / 6e-31 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10009809 pacid=23180139 polypeptide=Lus10009809 locus=Lus10009809.g ID=Lus10009809.BGIv1.0 annot-version=v1.0 ATGGCTATTTTAGGCCGACTGTTGACAGCTGCTCGCTCCCTCTGCTCCAACGCCGCCTCAAAATCCTTCTCCAGTCTCCCAAGTGGACTCACTTCACGAT ATCCCTATCATCACCGATTCTCCGGCCGCTGTTCTCTACTCAGAATCACGGATCCCATGTTAGCTTCCGATGCTACCGAACTAAACGCACTATATCCTAT CCTTCTCATTGGGTTGTTTGGTGGCGGACTTAACGTGGCATGTGCAGAACCTGTTCAGGATGGTGCAGCAGCATCATCTCCTCTGCCGTCGGAGCCACCC TCTAGTTATCCGGATCTGGAGGAGGCTGCCAAGAGAGAACGGAAACGAATCGAGGATGTTCTCATCAGTAAAGGGATCAAACATGGCTCCTATCCTCGCT TCACAGTTGCTGTCAAGGGCCAAAAGATAACGGTCAAGTTCCAGATTTCTCCTTCCTGTGATATTACTCAGTTGGTTGCTCGTCTCGTATCACATTTGGG ATTAAAAACAGACGAGTCTGGCGGAGTTTCAGATATGTTACTACGGTCTTGGGAAAGTCCTGTTTCATGGCAACTGATACTCAGTCATCCAGAAATTGAG TTCTTAAAGCAAGGGATCTTAAGTGATGTAGAGCTTGATGCTTTGGCATCTGTTTTACAACTGGCCAATGGAAAATTAAAGAGCTTGGGAAGAAACCCTG CAGAATCTGCTGCACGGGCACCTACAATAGATCAATCAGTTGCCAGTCTGAAGGCCATGGGAGTGAGAGTTTATGGACTCGATGCACCTCTTATAAAGTC TACAAGCAATGACATTTCATGGGACAACATAGCTGGTTATGATAAGCAAAAACGAGAAATAGAAGACACTATCTTGTTGGCACTACACAATCCTGAAATC TATGATAACATTGCTCGTGGGACTCGAGACAAGTTTGAGTCAAATAGACCTCGTGCAGTGCTTTTTGAAGGCCCCCCGGATGTTATTTCTGATTGGCCGG CATACTTTAATTACGTGACATTTCCAGGCACAGGGAAAACATCTTGTGCACGTGTCATAGCCAATCAAGCGGGTGTACCGCTGCTGTACGTGCCACTGGA AGTAGTCGTGTCGAAATATTATGGGGAAAGTGAACGTCAATTGGGTAAAGTGTTCTCAATTGCTAATGAACTTCCCAATGGTGCCATCATATTTATAGAC GAGGTTGATTCTCTTGCTGTTACTCGTGATGGTGAAATGCATGAAGCCACTCGTAGAATTTTATCAGTGTTGCTACGACAGATTGATGGATTCGAACAAG ACAAGAAAGTTGTAGTCATTGCGGCCACAAACAGGAAACAGGACCTCGATCCTGCCTTGATCAGTCGGTTTGATTCAGTGATTACCTTTGGGCTGCCTGA TCAATCAAATCGCCAGGAAATTATCGGCCAGTACGCAAAGCACCTTACGGAATCTGATCTAGAGAGATTGGCTACTGTCACCGAAAAGCTGTCTGGGAGG GACATTAAGGATGTGTGCCAACAAGCAGAACGGTCATGGGCATCCAAGATAATTAGAGGACAAGCTGGTAAAGAAGAAGAAGATGGGGGGAGTAGTCTTC CACCTCTTTCGGAGTATATGGAGAGTGCTGCAAGCCGGCAGAAGGCACTTCAGCTGGATATTCCGGACCGGAGCAGTGAAGTGAAGGTCCTGGATAAAAC ATTCGGTTCTGTTATTTAG
AA sequence Show only first row Show all	>Lus10009809 pacid=23180139 polypeptide=Lus10009809 locus=Lus10009809.g ID=Lus10009809.BGIv1.0 annot-version=v1.0 MAILGRLLTAARSLCSNAASKSFSSLPSGLTSRYPYHHRFSGRCSLLRITDPMLASDATELNALYPILLIGLFGGGLNVACAEPVQDGAAASSPLPSEPP SSYPDLEEAAKRERKRIEDVLISKGIKHGSYPRFTVAVKGQKITVKFQISPSCDITQLVARLVSHLGLKTDESGGVSDMLLRSWESPVSWQLILSHPEIE FLKQGILSDVELDALASVLQLANGKLKSLGRNPAESAARAPTIDQSVASLKAMGVRVYGLDAPLIKSTSNDISWDNIAGYDKQKREIEDTILLALHNPEI YDNIARGTRDKFESNRPRAVLFEGPPDVISDWPAYFNYVTFPGTGKTSCARVIANQAGVPLLYVPLEVVVSKYYGESERQLGKVFSIANELPNGAIIFID EVDSLAVTRDGEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSVITFGLPDQSNRQEIIGQYAKHLTESDLERLATVTEKLSGR DIKDVCQQAERSWASKIIRGQAGKEEEDGGSSLPPLSEYMESAASRQKALQLDIPDRSSEVKVLDKTFGSVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04180			P-loop containing nucleoside t...		Lus10009809 [exp]	0	1
AT5G19070			SNARE associated Golgi protein...		Lus10021942 [exp]	4.5	0.8010
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Lus10016045 [exp]	14.1	0.7837
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Lus10036477 [exp]	23.7	0.7771
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	24.4	0.7600
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	26.0	0.7657
AT1G27510			Protein of unknown function (D...		Lus10042125 [exp]	29.2	0.7480
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10000114 [exp]	43.7	0.6502
AT1G19485			Transducin/WD40 repeat-like su...		Lus10039804 [exp]	48.0	0.7580
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	56.8	0.7425
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	57.7	0.7193

Compare expression of checked genes

Lus10009809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.