Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03000 1169 / 0 PEX6 peroxin 6 (.1) AT3G53230 282 / 6e-82 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 280 / 2e-81 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 258 / 2e-73 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 246 / 4e-69 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT5G08470 229 / 6e-62 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT3G56690 228 / 7e-62 CIP111 Cam interacting protein 111 (.1) AT2G03670 205 / 3e-56 CDC48B cell division cycle 48B (.1) AT1G53750 181 / 2e-49 RPT1A regulatory particle triple-A 1A (.1) AT3G05530 179 / 1e-48 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040918 [exp] 1701 / 0 AT1G03000 1041 / 0.0 peroxin 6 (.1) Lus10037385 [exp] 290 / 6e-85 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 281 / 1e-81 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 271 / 4e-78 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 262 / 8e-75 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 261 / 2e-74 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 257 / 5e-73 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023123 [exp] 256 / 3e-71 AT5G08470 1163 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Lus10001402 [exp] 246 / 4e-71 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G133000 [exp] 1324 / 0 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.015G080600 [exp] 290 / 7e-85 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 289 / 2e-84 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 285 / 5e-83 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 282 / 5e-82 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 282 / 5e-82 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 252 / 3e-71 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G174100 [exp] 239 / 1e-65 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.001G128700 [exp] 217 / 3e-60 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.006G035000 [exp] 221 / 1e-59 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10009814 pacid=23180148 polypeptide=Lus10009814 locus=Lus10009814.g ID=Lus10009814.BGIv1.0 annot-version=v1.0 ATGGTTGATAGAAGGAGGAGAAAGCCCCTGGTCCTTTCTTCCACCAAAGTCCTTATCAATTCTCTCTTGCTTTCTTCCTCCGATCATGACGGCCCATCCG CCGTCAGCAATCTCGCTACTCAGAATTCGTCCCCCAAGCTACTACACCTACGAGCCGGAATTCTCCGTTCATCTCTGGACGCTTCCGACTCCAAACAAAC TTCTGTCGACGATTCTGCTTTGATTGGCCTCTCGCTCTCAGTTCTCAAGAAGCTCGCAGTAACCTCCGGTTCCTTGGTGTTTGTCAAGAACCTTGAGACG AATGTGGAAAGGATGGCTCAGGTGGTTGTTTTGGATCTTCCAAATGACTATCCCCAAGCTTCTAGTGTAAAACGGGAGACCTCTAGGTTCCCCCCTACAA TGGTTCTCTTTCCTTCGTGCGTGTTTCCTTCAGATGATATTCTATTGCAAGACCAGGAGATTGCCTACATTTCTCCTTTACTAGCTTTTAACCTAGACTT GCACGTGTCCTGCTTGAAATCACTCGTACACCTCGGGGATGAAACCTTGATGTCATTGTTCAAGTCCAAAGCTGTTCATGATTCTCCTGGAGAGGCCCAT GTGGATTCTTTAGTTAAGGTAGGATTGCATCCCATAGCTCAACTGCCAAGATATGCCTCACACTTACGGGTATCGTTCATTAAGATACCAGAATGTGGCA TTCTCGAATCTTTGAAGGGAAGTTCTTCGATTGAAACTGAAGATCGGCAAGCAATGATTGATTCGGCATTGCATAGATACTTTGAAGTTGATAGGCATCT GGCAACAGGTGATGTCTTCAGCATCCAAATAAATTGGGATTGCCATTCAACTTTCTGTGTTCCTTGCAGTCAAAGATTGCAAAATGGAAACAACGAAACT ATTTATTTCAAGGTTGTGGCCATGGAGCCATCAGATGAAGCATTCCTCCGAGTCAATCATGCTCGAACAGCCCTTGTGCTTGGTGGGACTGCTTGTTCTG CTCTCCCTCCTGATCTGCTCATTGGTTTACCGAAAAGTCACATGCCTCTCCAAGCAGAGACAGTAAAGACTTTGGCATCCATCCTTACTCCACCTTTATG CCCTTCGGCACTCTCTTCCAAATTCAGAGTTGCAGTCCTGTTATACGGTGTAGCTGGTTGTGGAAAAAGGACGGTTGTTAAGTTTGTTGCTCAACGTTTA GGCCTTCATGTGGTGGAATTCAGCTGCCATAATCTTACAGCATCCTCTGACAGAAAGATATCTACTGAACTAGCTCAAGCATTTAAGACCGCTCAAAGAT ACTCACCAGCAATACTTGTACTCCGCCACTTTGATGTATTTCGAGATATCTCTCATGATGGTTCACCAAATGATCGTCTTGGTCTCATGTCTGAGGTTGC CTCAGTAATACGGGAATTCACTGAACCAGGTGCTGAAAGTGTGGGGTATGAAGATAGGTCAAATCCTGATCTTAAGAAGCCTCAGGTGCTCTTAGTAGCA GCTGCAGAAAGTTCTGAAGGTCTACCACCAATTGTTCGACGTTGCTTCAGCCATGAGATAAGCATGGGCTCTTTATCTGAGGAGCAGAGGGCTGAAATGT TTTCTCAGTTACTGCAAAGTGATTCTGAGCTCCTCCATAGTGAGCTGGATGATACAGTAAAGGATGTAGTTGCACAGACTTCTGGTTTCATGCCTAGGGA TTTGAACGCTTTAATTGCGGATGCTGGTGCAAACCTGATAACTAGAGCTGATGTTCCAGTTGAAAAGGATCAGGCTGAGGACTTGAATAGCTCCTGTATG GTCCAAAAATTGTACGAGAATAACTCCGACATTGCCTTGACTCGAGTTTTAGAGAAGGAATGTCTGGATAAAGCACTGAATCGTTCAAAGAAAAGGAATG CATCGGCATTAGGAACTCCAAAGGTTCCTAACATAAAGTGGGAAGATGTTGGTGGTCTAGAGGATGTGAAGAAATCTATTCTTGATACCGTGCAGTTGCC GCTTCTGCATAAAGATTTATTTTCCTCTGGGTTGAGAAAACGCTCTGGTGTCCTTCTATATGGTCCTCCTGGAACAGGAAAAACCTTGTTAGCAAAAGCT GTTGCAACAGAGTGCTCCTTGAATTTTCTCAGTGTTAAAGGGCCCGAATTAATCAACATGTACATAGGAGAGTCGGAGAAGAACGTCAGGGACATTTTTC AAAAGGCTAGATCAGCACGTCCTTGTGTCATTTTCTTTGACGAACTTGACTCTCTTGCTCCTGCTCGAGGTGCCTCAGGAGACTCTGGGGGTGTTATGGA TAGGGTGGTTTCTCAGATGCTCGCAGAGATTGATGGCCTGAGTGATTCAACACAGGACTTATTCATCATTGGAGCAAGCAATAGACCAGATCTTATTGAC CCAGCCCTTCTTCGTCCCGGACGATTTGACAAGTTACTATATGTTGGAGTAAACTCTGATGCATCTTACAGGGAGGGGGTTCTCAAGGCGCTGACACGAA AGTTCACATTGCATGAAGATGTGTCACTTTATTCAGTAGCAAAGAAATGTCCCCCAAATTTCACTGGTGCAGACATGTATGCCTTGTGTGCAGATGCTTG GTTCCAAGCAGCAAAGCGAAAGCTCTTGGATTTGGATTCTGACACCAGTGAAGCAGCTGATCAAGCTGACTCTGTGGTTGTTGAATATGAAGACTTCATG AAGGTAGTGGTGGAGCTATCTCCCTCGTTATCAATGGCTGAGCTTAAGAAGTATGAGGTGCTGCGGGAGAAACTCGAGGGACCTTCAAACACGTAA
AA sequence Show only first row Show all	>Lus10009814 pacid=23180148 polypeptide=Lus10009814 locus=Lus10009814.g ID=Lus10009814.BGIv1.0 annot-version=v1.0 MVDRRRRKPLVLSSTKVLINSLLLSSSDHDGPSAVSNLATQNSSPKLLHLRAGILRSSLDASDSKQTSVDDSALIGLSLSVLKKLAVTSGSLVFVKNLET NVERMAQVVVLDLPNDYPQASSVKRETSRFPPTMVLFPSCVFPSDDILLQDQEIAYISPLLAFNLDLHVSCLKSLVHLGDETLMSLFKSKAVHDSPGEAH VDSLVKVGLHPIAQLPRYASHLRVSFIKIPECGILESLKGSSSIETEDRQAMIDSALHRYFEVDRHLATGDVFSIQINWDCHSTFCVPCSQRLQNGNNET IYFKVVAMEPSDEAFLRVNHARTALVLGGTACSALPPDLLIGLPKSHMPLQAETVKTLASILTPPLCPSALSSKFRVAVLLYGVAGCGKRTVVKFVAQRL GLHVVEFSCHNLTASSDRKISTELAQAFKTAQRYSPAILVLRHFDVFRDISHDGSPNDRLGLMSEVASVIREFTEPGAESVGYEDRSNPDLKKPQVLLVA AAESSEGLPPIVRRCFSHEISMGSLSEEQRAEMFSQLLQSDSELLHSELDDTVKDVVAQTSGFMPRDLNALIADAGANLITRADVPVEKDQAEDLNSSCM VQKLYENNSDIALTRVLEKECLDKALNRSKKRNASALGTPKVPNIKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKA VATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLID PALLRPGRFDKLLYVGVNSDASYREGVLKALTRKFTLHEDVSLYSVAKKCPPNFTGADMYALCADAWFQAAKRKLLDLDSDTSEAADQADSVVVEYEDFM KVVVELSPSLSMAELKKYEVLREKLEGPSNT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	0	1
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	3.2	0.8320
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10041019 [exp]	4.2	0.8333
AT3G04160			unknown protein		Lus10042519 [exp]	5.7	0.7783
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	6.7	0.8188
AT1G17450			B-block binding subunit of TFI...		Lus10006533 [exp]	9.8	0.8132
AT5G49960			unknown protein		Lus10041014 [exp]	11.5	0.7702
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	15.9	0.7829
AT4G32820			Tetratricopeptide repeat (TPR)...		Lus10007462 [exp]	20.0	0.7924
AT2G16460			Protein of unknown function (D...		Lus10042073 [exp]	20.4	0.7446
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10043417 [exp]	20.5	0.7424

Compare expression of checked genes

Lus10009814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.