Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 107 / 6e-29 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 100 / 2e-26 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 95 / 2e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G61830 85 / 1e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 77 / 1e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 68 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 46 / 1e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G09750 43 / 2e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G20760 42 / 4e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 41 / 0.0001 ATHSD3 hydroxysteroid dehydrogenase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040933 [exp] 189 / 7e-61 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 125 / 4e-36 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 120 / 4e-34 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 118 / 3e-33 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 114 / 1e-31 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 114 / 1e-31 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 114 / 2e-31 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 115 / 7e-31 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 109 / 1e-29 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 112 / 4e-31 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 104 / 7e-28 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 104 / 8e-28 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 103 / 9e-28 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 103 / 2e-27 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 103 / 2e-27 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 102 / 6e-27 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 98 / 2e-25 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156701 [exp] 86 / 1e-22 AT3G61220 113 / 9e-32 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156833 [exp] 86 / 1e-22 AT3G61220 113 / 9e-32 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10009824 pacid=23180128 polypeptide=Lus10009824 locus=Lus10009824.g ID=Lus10009824.BGIv1.0 annot-version=v1.0 ATGGCGGAAACAAAAACCAAGAGGTCTATTGCAGTTGTGACGGGAGGGAACAAAGGGATCGGGTTCGAGATTTGCAGGCAGTTGGCTTCTAATAGCGTCC TGGTGGTTCTAACCGCCAGAGACATTAACAGAGGCCTCCACGCCGTCGAAAAGCTCCGACAACATGACAACATCGTATTGCACCAGCTTGACGTCGCCGA CAGTTCCAGCATTTATTCCCTCTCCGATTTCGTCACACCCCAATTCGGGACATTTTGGTATACGGTGAATAATGCTGCAATATTTCGAGCCATATTTCAG CAGCGTGATGATGGGGAACCGAAGATCAACTGGCTAGACGCGATCACCGATACATACGGAACTGGCGGAAGAATGCTTGAAGACGAACTACTACGGGGCC AAGGAAATGATTGA
AA sequence Show only first row Show all	>Lus10009824 pacid=23180128 polypeptide=Lus10009824 locus=Lus10009824.g ID=Lus10009824.BGIv1.0 annot-version=v1.0 MAETKTKRSIAVVTGGNKGIGFEICRQLASNSVLVVLTARDINRGLHAVEKLRQHDNIVLHQLDVADSSSIYSLSDFVTPQFGTFWYTVNNAAIFRAIFQ QRDDGEPKINWLDAITDTYGTGGRMLEDELLRGQGND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10009824 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	5.7	0.9259
AT5G55690	MADS		MADS-box transcription factor ...		Lus10014095 [exp]	7.9	0.8878
					Lus10039759 [exp]	9.6	0.9037
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	12.2	0.9092
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	14.0	0.9060
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	15.3	0.9004
AT4G28050		TET7	tetraspanin7 (.1)		Lus10038964 [exp]	16.5	0.8653
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	16.8	0.9001
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	18.3	0.7695
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10000422 [exp]	21.6	0.8475

Compare expression of checked genes

Lus10009824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.