Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18140 604 / 0 LAC1, ATLAC1 laccase 1 (.1) AT5G60020 450 / 1e-153 LAC17, ATLAC17 laccase 17 (.1) AT5G03260 444 / 1e-151 LAC11 laccase 11 (.1) AT2G29130 432 / 2e-146 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 404 / 7e-136 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 393 / 1e-131 LAC10 laccase 10 (.1) AT2G30210 389 / 1e-129 LAC3 laccase 3 (.1) AT5G05390 385 / 3e-128 LAC12 laccase 12 (.1) AT2G40370 379 / 1e-125 LAC5 laccase 5 (.1) AT5G58910 373 / 3e-124 LAC16 laccase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040936 [exp] 885 / 0 AT1G18140 790 / 0.0 laccase 1 (.1) Lus10009645 [exp] 731 / 0 AT1G18140 801 / 0.0 laccase 1 (.1) Lus10019122 [exp] 472 / 3e-162 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 472 / 3e-162 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 463 / 7e-159 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10026512 [exp] 462 / 1e-158 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10023189 [exp] 451 / 5e-154 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10002227 [exp] 449 / 2e-153 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10027782 [exp] 421 / 1e-142 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040400 [exp] 663 / 0 AT1G18140 840 / 0.0 laccase 1 (.1) Potri.012G048900 [exp] 652 / 0 AT1G18140 858 / 0.0 laccase 1 (.1) Potri.015G040600 [exp] 649 / 0 AT1G18140 840 / 0.0 laccase 1 (.1) Potri.015G040700 [exp] 632 / 0 AT1G18140 726 / 0.0 laccase 1 (.1) Potri.001G054600 [exp] 468 / 1e-160 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.006G087500 [exp] 466 / 7e-160 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 466 / 9e-160 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 453 / 9e-155 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.007G023300 [exp] 451 / 6e-154 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.004G156400 [exp] 448 / 4e-153 AT5G03260 877 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10009827 pacid=23180167 polypeptide=Lus10009827 locus=Lus10009827.g ID=Lus10009827.BGIv1.0 annot-version=v1.0 ATGTCGAAATCAAGGTCACCAATAGCGCATGGAGTAAAGCAGATCCGAAGTGGTTGGGCGGACGGACCGGCTTACATCACACAGTGCCCGATACAAGGAG GTCATTCCTACACGTACAAGTTCAGTGTTACTGAACAAAGAGGAACCTTACTTTGGCATGCCCACTACGGTTGGCAACGTGCCACAATCTACGGTGCATT CATCGTCTATCCTAGATTGCCATACCCATTCTTGCAACCACACAAACCCATTCATAAAGAAATTCCCATCATTTTTGGTGAGTGGTGGGATCACGATGAA GACGAACTTGAAAAGAGAATGCTAGCAACAGGAGCAGGTGCATTCATTTCTCTAGCTTACACCATCAATGGACTTCCTGGTCCCCTTTATCCTTGCTCAA ATCCAGACACATTCACGGCCACGGTGGAATACGGGAAGACTTACATGCTACGAGTAATCAACGCGGCACTAGCCGATGAGCTCTTCTTCTCCATATCCAA ACACACCCTAACTGTCGTGGAAGTTGACGCAGTCTACACAAAGCCATTCACCACCAATGCCATTATGGTAGCTCCCGGCCAAACCACCACTCTTCTCATC ACCACCGACCAACTCCCGGGCCCCACCGGCGCTTTTGTCATGGCCGCCACACCTTACGTAACCTCATACTTCCCCTTTGACAACTCCACTACGGTAGGGT TTTTAAGATACAACACTACCTTCGGCAGGGCTGGAGCTCAAACTCAGGAGCATCCGCAGCTGTCTGGTCGTTTGTCTCCTGAAAACTTGCCCAAAATGGA AGACACCAATTTTGCAACGACATTTGCAGGCAAGATTAAGTCCCTAAACACGGTTGAATACCCGTGCAATGTGCCTCAGCAGATCGACAAGCGGGTGGTC ATGACCATCAGTCTGAACCTCCAAGACTGTCCCCACGGAAAGACGTGTACCGGTTACCAAGGGAAGATGTTCTTGGCTTCGATCAACAACCAATCGTTTG TTCGCCCTACGACTTCCTTCCTCCAAACCCACTACTTGGCCGGTTTGAAGAACGATTCAGGCTTCCCCGAAAGGCCCCCAAACGTGTTTAACTATACGGG GGGAGACCCGTTGACCATGAACACTAACATGGAGTTCGGTTCAAAGATGATAGTTGTGCCATATGGCACCAGGATTGAGATGGTGCTACAAGGCACAAAT CTCTTGAACGTGGAGAACCACCCGATCCATATCCACGGGCACAACTTCTTTGTGGTGGGGACCGGGTTTGGGAACTTTGACGAGTCAAAGGATCCAGAGA AGTACAATTTGGTTGATCCTCCGGAGAGGAACACAGTGGCCGTTCCAACTGGTGGTTGGGCTGCTATCCGGATCAAGGCTGATAACCCGGGGGTTTGGTT CATACATTGCCACTTGGAGCCGCACACTTCATGGGGACTCGCGACCGGATTTGTTGTAGAGGATGGTCCTTTGCCCTCTCAACGACTGCTTCCTCCCCCT AGAGATTTTCCAGCCTGCTAG
AA sequence Show only first row Show all	>Lus10009827 pacid=23180167 polypeptide=Lus10009827 locus=Lus10009827.g ID=Lus10009827.BGIv1.0 annot-version=v1.0 MSKSRSPIAHGVKQIRSGWADGPAYITQCPIQGGHSYTYKFSVTEQRGTLLWHAHYGWQRATIYGAFIVYPRLPYPFLQPHKPIHKEIPIIFGEWWDHDE DELEKRMLATGAGAFISLAYTINGLPGPLYPCSNPDTFTATVEYGKTYMLRVINAALADELFFSISKHTLTVVEVDAVYTKPFTTNAIMVAPGQTTTLLI TTDQLPGPTGAFVMAATPYVTSYFPFDNSTTVGFLRYNTTFGRAGAQTQEHPQLSGRLSPENLPKMEDTNFATTFAGKIKSLNTVEYPCNVPQQIDKRVV MTISLNLQDCPHGKTCTGYQGKMFLASINNQSFVRPTTSFLQTHYLAGLKNDSGFPERPPNVFNYTGGDPLTMNTNMEFGSKMIVVPYGTRIEMVLQGTN LLNVENHPIHIHGHNFFVVGTGFGNFDESKDPEKYNLVDPPERNTVAVPTGGWAAIRIKADNPGVWFIHCHLEPHTSWGLATGFVVEDGPLPSQRLLPPP RDFPAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10009827 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	4.5	0.8510
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	7.7	0.8019
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	7.7	0.8054
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	7.7	0.8200
AT5G52390			PAR1 protein (.1)		Lus10040702 [exp]	8.2	0.7626
AT1G12650			unknown protein		Lus10005657 [exp]	11.0	0.8049
					Lus10023010 [exp]	12.2	0.8374
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	12.5	0.8306
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	12.5	0.8404
AT3G23325			Splicing factor 3B subunit 5/R...		Lus10011813 [exp]	14.5	0.8050

Compare expression of checked genes

Lus10009827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.