Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40220 112 / 2e-28 AP2_ERF ATABI4, GIN6, SUN6, SIS5, SAN5, ISI3, ABI4 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) AT3G57600 89 / 2e-20 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT1G75490 86 / 1e-19 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G18450 87 / 2e-19 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT2G40340 85 / 2e-18 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT2G40350 79 / 1e-17 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT3G11020 73 / 2e-14 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT3G16280 71 / 3e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G38340 71 / 4e-14 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 71 / 6e-14 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040944 [exp] 251 / 1e-81 AT2G40220 142 / 2e-39 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 87 / 2e-19 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 84 / 5e-19 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10010632 [exp] 84 / 7e-19 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 85 / 2e-18 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 83 / 6e-18 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 82 / 8e-18 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10012226 [exp] 81 / 6e-17 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10002855 [exp] 78 / 4e-16 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071100 [exp] 131 / 2e-35 AT2G40220 135 / 7e-37 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Potri.010G186400 [exp] 119 / 2e-30 AT2G40220 102 / 2e-24 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 90 / 1e-20 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 88 / 6e-20 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.005G233300 [exp] 83 / 2e-18 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 83 / 3e-18 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.008G073600 [exp] 72 / 5e-14 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 69 / 4e-13 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.001G067600 [exp] 68 / 4e-13 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.016G126100 [exp] 69 / 7e-13 AT2G38340 96 / 4e-22 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10009834 pacid=23180140 polypeptide=Lus10009834 locus=Lus10009834.g ID=Lus10009834.BGIv1.0 annot-version=v1.0 ATGGACGTCGACGACAACAATCCTCCAAACCCTAATACTAATACCTCACCCCCTTCCTCTCCTAATGACAACAACAACACCAACTCTCCCTCTCTCCCCA ATTCCGCCTCCTCCTCCTCCTCCTCCGCCAAGAAGGGCAAGTTGTCGGGGAAAGGTGGCCCCGACAATGGCAAGTTCCGTTACAGAGGTGTTCGGCAGCG CAGCTGGGGTAAGTGGGTTGCCGAGATCCGTGAGCCCAGGAAGAGGACACGTAAGTGGCTGGGCACTTTCTCCACCGCCGAGGACGCCGCACGCGCCTAC GACCGCGCCGCCCTCATCCTCTACGGCTCACGCGCTCAGCTCAACTTGCAACCCTCCTCCCTCGCCGCCTGCTCCTCCTCCTCTTCTTCTCAAACCACTG CTTCTAATAATAATAATTCGTCCTCGTCGTCGAGATCTTCAACTCAGACACTAAGGCCTTTGCTCCCTCGCCCTTCCGGCTTTGGCTTCACCCTCTCCCG CTCCTCCACTAATATCCACAACGCCGCTGCTAATAATTATTACCCCAGTTTCCTGATGGGGGGTAATCATAATGCTAGGATTTCGTCGTCCTATCCGCCA AACGCCGCCTACTTCATTCCCCACCACCAGCATCCAAGTATACCTCATTCTCATAATCAGTTGTATCATCAGAATCCATTAATGTTGATGAACCAGCAGC AACATCTTCCCAATCCTACAACGGCGTCGTACGAGCATCAAGTCCCGCAGCAGCAGCAACAACAACAACAACAAGAATATGGACAGCAAGAGGAAGAAGG GCATTGCTTGTACGAGGAGGATATCAATTCGCTGTCGGGGTCCAACGGAAACGATACTCAGGCGGTTGAGGTTCAGGATCCAGGGTTGCATGCAGATCCA GGGATGTGGCCATGTGATGATGAGGATTACTATCCTAATTCTATTTGGGATTATGGAGACCATAATTCCTTCTTTGATTTCTGA
AA sequence Show only first row Show all	>Lus10009834 pacid=23180140 polypeptide=Lus10009834 locus=Lus10009834.g ID=Lus10009834.BGIv1.0 annot-version=v1.0 MDVDDNNPPNPNTNTSPPSSPNDNNNTNSPSLPNSASSSSSSAKKGKLSGKGGPDNGKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAY DRAALILYGSRAQLNLQPSSLAACSSSSSSQTTASNNNNSSSSSRSSTQTLRPLLPRPSGFGFTLSRSSTNIHNAAANNYYPSFLMGGNHNARISSSYPP NAAYFIPHHQHPSIPHSHNQLYHQNPLMLMNQQQHLPNPTTASYEHQVPQQQQQQQQQEYGQQEEEGHCLYEEDINSLSGSNGNDTQAVEVQDPGLHADP GMWPCDDEDYYPNSIWDYGDHNSFFDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10009834 [exp]	0	1
					Lus10006287 [exp]	1.0	0.8788
AT4G02160			unknown protein		Lus10010018 [exp]	2.0	0.8530
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	3.5	0.8481
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	3.9	0.8362
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	4.9	0.8356
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	5.3	0.8241
					Lus10028940 [exp]	6.0	0.8425
					Lus10033191 [exp]	13.4	0.8056
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10030475 [exp]	14.3	0.6603
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	17.4	0.8193

Compare expression of checked genes

Lus10009834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.