Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05390 811 / 0 LAC12 laccase 12 (.1) AT2G40370 781 / 0 LAC5 laccase 5 (.1) AT2G30210 668 / 0 LAC3 laccase 3 (.1) AT5G07130 655 / 0 LAC13 laccase 13 (.1) AT2G38080 522 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 516 / 8e-180 LAC10 laccase 10 (.1) AT5G03260 514 / 5e-179 LAC11 laccase 11 (.1) AT2G29130 512 / 3e-178 LAC2, ATLAC2 laccase 2 (.1) AT5G09360 511 / 1e-177 LAC14 laccase 14 (.1) AT5G58910 491 / 7e-171 LAC16 laccase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040957 [exp] 958 / 0 AT5G05390 810 / 0.0 laccase 12 (.1) Lus10007532 [exp] 863 / 0 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10017426 [exp] 860 / 0 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10017427 [exp] 770 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10007531 [exp] 764 / 0 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10042249 [exp] 613 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10027747 [exp] 553 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10035546 [exp] 553 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10017175 [exp] 535 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183600 [exp] 842 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 838 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 835 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 834 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.013G152700 [exp] 683 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 665 / 0 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.006G097000 [exp] 545 / 0 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G094100 [exp] 544 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.006G097100 [exp] 541 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.004G156400 [exp] 540 / 0 AT5G03260 877 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10009841 pacid=23180135 polypeptide=Lus10009841 locus=Lus10009841.g ID=Lus10009841.BGIv1.0 annot-version=v1.0 ATGTCAACACTCATGTCCATCAATTTGTCGCATGGAGTGAGGCAAATGAGAACAGGGTGGTCAGATGGACCTGAGTATGTTACACAGTGTCCAATTCAGC CAGGAGGCAGCTACACTTATCGATTCACAATTCGTGAACAAGAAGGAACCTTATGGTGGCATGCTCACAGCTCATGGCTCAGAGCCACTGTATATGGGGC TCTTATCATCCACCCCAAACATGGTGCTCCTTTCCCATTCCCTAAGCCTGCCCGTCAATCCACTCTCATGCTCGGTGAATGGTGGAACGCGAATCCGGTT GATGTAGTAAGGGAAGCAACCCGAACTGGGACGGCTCCAAATATTTCAGATGCTTACACCATCAATGGCCAACCCGGAGATCTCTACAACTGTTCTAGTG AAGACACAGCTGTCGTCCCCATCGCTGCCGGCGAGACCAATCTTCTCCGAGTCATCAATTCCGCAATGAATCAGCCATTGTTCTTCACAATCGCCAACCA CAAGTTCACCGTAGTTGGAGCAGACGCATCCTACGTCAAACCCTTCACCACATCGGTCATGATGCTGGGGCCGGGCCAGACCACCGACGTACTCATCTCC GGTGACCAAACCCCCGGTAGGTACTACATGGCTGCACGCGCATATCAAAGCGCACAGAATGCGTCTTTCGACACCACGACCACCACTGCAATCCTCCAGT ACAACAATTCCTCAAATTCCACCAAATTACCAATCATGCCACGTCTACCGGCCTTCAACGACACCGCAACCGTCACAGCGTTCAGCGCCAGCTTCAAGAG TAAGGAAAAGGCGCTCGTCCCGAAAGAAATCGACGAGAATTTGTTCTTCACAGTTGGATTGGGGCTAAATAACTGCCCGCCGAATTTCAACGCTAGTGAA AGATGCCAGGGGCCTAATGGGACAAGGTTCACAGCTAGTATGAACAATGTCTCGTTTGTGCTTCCGTCGAATTTTTCCTTATTGGAGGCTCACAAGCTTA ATGTCGGAGGAGTTTTCACCTCCGATTTTCCGGCTAGGCCTCCCCAAGCGTTTGATTACACCGGAAATGTAAGCCGGTCGTTGTGGCAGCCGATGAGCGG GACGAGACTGTACAAACTTAAATACGGGTCAAGGGTACAAGTGGTGCTTCAGGGGACGAGTATTGTGACTCCGGAGAACCATCCGATTCATCTCCATGGA TATGATTTCTACATTTTAGCTGAAGGGTTTGGCAATTTCGATCCCAAGACTGATACTTCCAAGTTTAATCTTGTTGATCCGCCTCTGAGGAACACAGCTG CAGTTCCTGTGAATGGATGGTCAGTTATCCGATTCGTGGCGGATAATCCAGGTGTGTGGCTGATGCATTGTCATTTGGATGTTCATATCACATGGGGACT AGCCATGGCTTTCTTGGTGGAGGATGGAATTGGGAAATTGGAAGCCATTGAGCCTCCCCCTGAAGATCTTCCAATCTGCTGA
AA sequence Show only first row Show all	>Lus10009841 pacid=23180135 polypeptide=Lus10009841 locus=Lus10009841.g ID=Lus10009841.BGIv1.0 annot-version=v1.0 MSTLMSINLSHGVRQMRTGWSDGPEYVTQCPIQPGGSYTYRFTIREQEGTLWWHAHSSWLRATVYGALIIHPKHGAPFPFPKPARQSTLMLGEWWNANPV DVVREATRTGTAPNISDAYTINGQPGDLYNCSSEDTAVVPIAAGETNLLRVINSAMNQPLFFTIANHKFTVVGADASYVKPFTTSVMMLGPGQTTDVLIS GDQTPGRYYMAARAYQSAQNASFDTTTTTAILQYNNSSNSTKLPIMPRLPAFNDTATVTAFSASFKSKEKALVPKEIDENLFFTVGLGLNNCPPNFNASE RCQGPNGTRFTASMNNVSFVLPSNFSLLEAHKLNVGGVFTSDFPARPPQAFDYTGNVSRSLWQPMSGTRLYKLKYGSRVQVVLQGTSIVTPENHPIHLHG YDFYILAEGFGNFDPKTDTSKFNLVDPPLRNTAAVPVNGWSVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVEDGIGKLEAIEPPPEDLPIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	0	1
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	4.0	0.9218
AT5G49350			Glycine-rich protein family (....		Lus10041125 [exp]	4.5	0.8858
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	4.9	0.8456
AT4G12500			Bifunctional inhibitor/lipid-t...		Lus10032258 [exp]	5.9	0.8111
AT1G11920			Pectin lyase-like superfamily ...		Lus10018430 [exp]	7.1	0.8226
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	8.5	0.9063
					Lus10022970 [exp]	9.8	0.8227
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	9.9	0.8975
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10027227 [exp]	11.1	0.8910
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Lus10001068 [exp]	12.4	0.8245

Compare expression of checked genes

Lus10009841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.