Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19553 655 / 0 Amino acid permease family protein (.1) AT1G31830 486 / 3e-169 Amino acid permease family protein (.1.2) AT5G05630 484 / 1e-168 Amino acid permease family protein (.1) AT1G31820 434 / 4e-149 Amino acid permease family protein (.1) AT3G13620 357 / 1e-118 Amino acid permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040966 [exp] 876 / 0 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 494 / 1e-172 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 494 / 8e-169 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 479 / 1e-166 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10039180 [exp] 367 / 9e-123 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 331 / 9e-109 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 330 / 4e-108 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10040142 [exp] 45 / 0.0001 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 45 / 0.0002 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296100 [exp] 704 / 0 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.009G090300 [exp] 697 / 0 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.004G178000 [exp] 493 / 2e-172 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.003G103600 [exp] 478 / 4e-166 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.001G007200 [exp] 376 / 2e-126 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G007300 [exp] 360 / 5e-120 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G150700 [exp] 48 / 1e-05 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.003G083700 [exp] 43 / 0.0005 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10009849 pacid=23180191 polypeptide=Lus10009849 locus=Lus10009849.g ID=Lus10009849.BGIv1.0 annot-version=v1.0 ATGGGTGAAGAGGGAATATCGAGTGATGTTGAAGGCGAAACAGCTACTACAACTAGTTCAAGGCCGAAACTGACGGTATTGCCTCTAATCGCTCTAATTT TCTATGAGGTTTCCGGCGGTCCATTTGGGATTGAAGATTCGGTCAAAGCAGGAGGAGGTCCTTTACTAGCTCTGCTTGGATTCTTGATCTTCCCTCTCAT TTGGAGTATCCCTGAAGCTCTAATCACAGCTGAGCTAGCAACAAGTTTCCCTGAGAATGGAGGATATGTCATTTGGATCTCTTCCGCCTTCGGTCCATTT TGGGGTTTCCAAGAAGGGTTTTGGAAATGGTTTAGTGGGGTTATGGATAATGCTCTTTACCCTGTGTTATTCCTTGATTACTTGAAGCATTCTTTCCCTA TTTTCAATCACTTGGCTGCTCGAATCCCTGCTCTTTTAGGGATCACAGGTTCATTAACATACTTGAACTACAGGGGACTCCACATTGTTGGGTTCACGGC AGTTTCACTCGCTGCTTTCTCCTTGCTCCCATTCGTCGTAATGGCTGTCCTTTCAATCCCTAAAATTCGGCCTAGACAGTGGCTTGCTGTTGATTTTGGC ATGGTGGACTGGAGGGGTTACTTCAACACCATGTTTTGGAATCTCAATTACTGGGATAAGGCTAGTACACTTGCTGGTGAGGTTGAGAACCCGAGTAAGA CATTCCCAAAGGCGCTGTTTGGGGCTGTGATTCTCGTAATGGGTTCATATTTGATTCCTCTATTGGTTGGTACCGGTGCTCTAATGACTCCGTTTAGCCA GTGGAGTGATGGCTACTTTGCTGAAGTTGGATTCTTGATTGGAGGGGCCTGGCTCAGGTGGTGGATCCAAGCTGCTGCGGCTATGTCTAATATGGGGCTG TTCGAGGCGGAAATGAGCGCTGATGCGTACCAACTTCTTGGCATGAGTGAGATTGGAATGCTTCCTTCTCTATTTGGTTCGAAGTCGAAACACGGTACCC CCACGATCAGCATCCTATTCTCGGCTGCTGGGGTGATCTTTTTGTCATGGATGAGCTTCCAGGAGATTGTGGAGTTTCTCAACTTCTTGTACGCAATGGG GATGCTGTTGGAATTTGCAGCGTTCATCAAGCTGAGAATCAAGAAGCCTGATTTGCACAGGCCGTACAGAGTTCCTCTGGAGACTTTTGGGGCAATACTT CTATGCCTCCCACCTACGGTTTTACTTGTTCTGGTAATGTGTTTGGCTAGTTTGAGGACATTCCTGATAAGTGGAGCTGTTATAGCCGTGGGGTTTATTA TTTATCCAACTTTACTTCTTGCCAAGAGCCAGAAATGGATCGAGTTCCATACTCAAGAACCTGTAGACGTTCCTAATGAAGTTGACGGTGGAGAAGTTGT AGATGAGTCTGCAGTTGGTCTGCTGGCTGATCTGTCATGTGTGAAGACGGATTTGATGAAGTCGTGA
AA sequence Show only first row Show all	>Lus10009849 pacid=23180191 polypeptide=Lus10009849 locus=Lus10009849.g ID=Lus10009849.BGIv1.0 annot-version=v1.0 MGEEGISSDVEGETATTTSSRPKLTVLPLIALIFYEVSGGPFGIEDSVKAGGGPLLALLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPF WGFQEGFWKWFSGVMDNALYPVLFLDYLKHSFPIFNHLAARIPALLGITGSLTYLNYRGLHIVGFTAVSLAAFSLLPFVVMAVLSIPKIRPRQWLAVDFG MVDWRGYFNTMFWNLNYWDKASTLAGEVENPSKTFPKALFGAVILVMGSYLIPLLVGTGALMTPFSQWSDGYFAEVGFLIGGAWLRWWIQAAAAMSNMGL FEAEMSADAYQLLGMSEIGMLPSLFGSKSKHGTPTISILFSAAGVIFLSWMSFQEIVEFLNFLYAMGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGAIL LCLPPTVLLVLVMCLASLRTFLISGAVIAVGFIIYPTLLLAKSQKWIEFHTQEPVDVPNEVDGGEVVDESAVGLLADLSCVKTDLMKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19553			Amino acid permease family pro...		Lus10009849 [exp]	0	1
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	1.0	0.8915
AT5G35840		PHYC	phytochrome C (.1)		Lus10006388 [exp]	2.8	0.8051
AT4G12590			Protein of unknown function DU...		Lus10039028 [exp]	4.2	0.8212
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10012090 [exp]	5.7	0.8091
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	13.0	0.7777
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	17.2	0.7765
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	17.3	0.7872
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	23.0	0.7398
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10009289 [exp]	23.1	0.7769
AT4G25670			unknown protein		Lus10038842 [exp]	23.2	0.7645

Compare expression of checked genes

Lus10009849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.