Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55740 655 / 0 ATPROT2, ProT2 proline transporter 2 (.1.2) AT2G39890 655 / 0 ATPROT1, ProT1 proline transporter 1 (.1.2) AT2G36590 634 / 0 ATPROT3, ProT3 proline transporter 3 (.1) AT1G08230 136 / 1e-34 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 133 / 1e-33 Transmembrane amino acid transporter family protein (.1) AT1G48640 102 / 4e-23 Transmembrane amino acid transporter family protein (.1) AT5G40780 97 / 2e-21 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT5G63850 97 / 4e-21 AAP4 amino acid permease 4 (.1) AT5G09220 95 / 1e-20 AAP2 amino acid permease 2 (.1) AT1G77380 94 / 2e-20 AAP3, ATAAP3 amino acid permease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040238 [exp] 685 / 0 AT3G55740 673 / 0.0 proline transporter 2 (.1.2) Lus10028251 [exp] 683 / 0 AT3G55740 676 / 0.0 proline transporter 2 (.1.2) Lus10038639 [exp] 138 / 2e-35 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 132 / 3e-33 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 112 / 3e-26 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10029702 [exp] 100 / 3e-22 AT1G77380 706 / 0.0 amino acid permease 3 (.1) Lus10008263 [exp] 99 / 7e-22 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10036777 [exp] 97 / 5e-21 AT1G77380 684 / 0.0 amino acid permease 3 (.1) Lus10029703 [exp] 96 / 1e-20 AT1G44100 688 / 0.0 amino acid permease 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194600 [exp] 698 / 0 AT2G39890 702 / 0.0 proline transporter 1 (.1.2) Potri.008G062900 [exp] 690 / 0 AT2G39890 687 / 0.0 proline transporter 1 (.1.2) Potri.005G219300 [exp] 160 / 2e-43 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 153 / 1e-40 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.003G138100 [exp] 150 / 8e-40 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G149900 [exp] 142 / 1e-36 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 142 / 1e-36 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G026600 [exp] 139 / 6e-36 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.015G091600 [exp] 106 / 2e-24 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G055800 [exp] 106 / 2e-24 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10009877 pacid=23180142 polypeptide=Lus10009877 locus=Lus10009877.g ID=Lus10009877.BGIv1.0 annot-version=v1.0 ATGACGATCAGAGAGGAGATGAAGATGGTGGGATTCACATGGAATGAAAGTAGTATAATTTTAGTGTTAGATTTAGGACTGAGATACTACATCAATGGGG TGGACGCCTACCTGATTCAGTCGTCAACGGAAAAACTCAAGGAGATAAGCTCTTCTTCAACCAAGCTGGCTTTCTCTCACAATTTAGTGTTGGGGGAGGA GGAGGATGCGGCGGAGACAGCATCGCCAATACACGATGAGACCTTTTCCTTATTGCCCCAGCCCCACTCGGAGCTCCGGAACGGGATTCTGAAAACGGAG ACTCACGGCGGAGGTGACTTTCCTCGTCCGGCGGGCAGATTGCACGATATGGCGAATTTATCAGTCGAGATTCCTGAGACCGCACATCAGATAAGCAGCG ATTCATGGTTCCAAGTGGGATTTGTTCTGACCACTGGGATCAATAGTGCCTATGTATTAGGTTATTCAGGCACAATTATGGTCCCTCTGGGGTGGATATA TGGAGTGGTCGGTTTGATTCTTGCCACTGCCATTTCTTTGTATGCCAACTCGCTGGTCGCTAAGCTACATGAGTATGGAGGCAAAAGGCATATCAGATAC AGAGATTTGGCCGGATTCATATATGGTGAGAGAGCTTACTCTGTGACGTGGGTTTTGCAGTATGTGAATCTTTTCATGATCAACGCTGGTTATATCATCC TTGCTGGCCAGGCTCTTAAGGCTGCCTACGGTCTTTTCCATGAAGATGGCCCAATGAAGCTTCCATACTTCATAGCCATTGCTGGTGTTGTATGTGGTTT GTTTGCCATTTCAACTCCTCATCTTTCGGCTCTGGGAGTTTGGCTGGGAGTTTCAACAGTCCTTAGTCTGATTTATATAATTGTTGCCTTCGTGCTCTCC ATTAAAGATGGGGTCAATACACCGGCCAGGGACTACAACATCCCGGGGACAACAACAAGCAAGATCTTTACAACAATTGGGGCATCTGCCAATCTTGTTT TTGCATTCAATACAGGAATGCTCCCAGAAATACAGGCAACGATAAAGCAGCCAGTAGTTAAGAACATGATGAAAGCACTCTACTTTCAGTTCACGGCTGG AGTTTTACCCATGTATGCTATTACATTCATTGGCTACTGGGCATATGGTTCATCCACATCGACCTATTTGCTTAGCAGCGTCAAGGGTCCAGTTTGGGTA AAGGCATTGGCTAACATTGCTGCATTCTTCCAGTCAGTCATTGCTTTACATATATTCGCTAGTCCAATGTACGAGTTCCTGGATACCAAATATGGCATAA AGGGAAATCAATTTTCCATTGGCAACTTATCATTCAGGATAGCAGTAAGAGGCGGCTACCTTACGCTCAACACATTGGTCTCAGCACTACTGCCATTTTT GGGAGATTTCATGAGCCTCACAGGGGCTATCAGCACGTTTCCCCTCACATTCATTCTTGCAAACCACATGTACCTAGTAGCAAAGGGGAACACATTGAGC TCTTTCCAAAAGCTGTGGCACTGGGTCAACGTGCTTTTCTTCGGATTAATGTCCATTGCAGCACTTATTGCTGCTCTACGGCTGATTGCTGTAGATTCCA AGACTTACCATGTTTTTGCAGACTTGTGA
AA sequence Show only first row Show all	>Lus10009877 pacid=23180142 polypeptide=Lus10009877 locus=Lus10009877.g ID=Lus10009877.BGIv1.0 annot-version=v1.0 MTIREEMKMVGFTWNESSIILVLDLGLRYYINGVDAYLIQSSTEKLKEISSSSTKLAFSHNLVLGEEEDAAETASPIHDETFSLLPQPHSELRNGILKTE THGGGDFPRPAGRLHDMANLSVEIPETAHQISSDSWFQVGFVLTTGINSAYVLGYSGTIMVPLGWIYGVVGLILATAISLYANSLVAKLHEYGGKRHIRY RDLAGFIYGERAYSVTWVLQYVNLFMINAGYIILAGQALKAAYGLFHEDGPMKLPYFIAIAGVVCGLFAISTPHLSALGVWLGVSTVLSLIYIIVAFVLS IKDGVNTPARDYNIPGTTTSKIFTTIGASANLVFAFNTGMLPEIQATIKQPVVKNMMKALYFQFTAGVLPMYAITFIGYWAYGSSTSTYLLSSVKGPVWV KALANIAAFFQSVIALHIFASPMYEFLDTKYGIKGNQFSIGNLSFRIAVRGGYLTLNTLVSALLPFLGDFMSLTGAISTFPLTFILANHMYLVAKGNTLS SFQKLWHWVNVLFFGLMSIAALIAALRLIAVDSKTYHVFADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39890		ATPROT1, ProT1	proline transporter 1 (.1.2)		Lus10009877 [exp]	0	1
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	3.5	0.8365
AT2G04220			Plant protein of unknown funct...		Lus10039183 [exp]	3.7	0.8087
AT3G47570			Leucine-rich repeat protein ki...		Lus10037840 [exp]	5.0	0.7957
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	7.7	0.8366
AT2G37480			unknown protein		Lus10025314 [exp]	10.9	0.8588
AT5G11350			DNAse I-like superfamily prote...		Lus10008086 [exp]	13.0	0.8115
AT3G04310			unknown protein		Lus10003583 [exp]	13.2	0.8120
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	20.8	0.7944
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Lus10020719 [exp]	20.9	0.8485
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	28.7	0.8105

Compare expression of checked genes

Lus10009877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.