Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11320 548 / 0 Nucleotide-sugar transporter family protein (.1) AT5G05820 542 / 0 Nucleotide-sugar transporter family protein (.1) AT5G04160 446 / 6e-159 Nucleotide-sugar transporter family protein (.1) AT3G10290 441 / 2e-156 Nucleotide-sugar transporter family protein (.1) AT1G12500 388 / 2e-135 Nucleotide-sugar transporter family protein (.1) AT1G21870 173 / 2e-51 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 168 / 8e-50 EamA-like transporter family protein (.1) AT4G32390 116 / 6e-30 Nucleotide-sugar transporter family protein (.1) AT5G11230 116 / 6e-30 Nucleotide-sugar transporter family protein (.1) AT5G25400 114 / 5e-29 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014832 [exp] 609 / 0 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 532 / 0 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 529 / 0 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 503 / 0 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 432 / 3e-153 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 432 / 4e-153 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 338 / 3e-117 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 325 / 6e-111 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 173 / 2e-51 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194100 [exp] 556 / 0 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 548 / 0 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 502 / 0 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 478 / 9e-172 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 448 / 7e-160 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 423 / 5e-150 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 409 / 2e-143 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 400 / 4e-140 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.002G084500 [exp] 171 / 8e-51 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.005G177200 [exp] 170 / 2e-50 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10009878 pacid=23180144 polypeptide=Lus10009878 locus=Lus10009878.g ID=Lus10009878.BGIv1.0 annot-version=v1.0 ATGAAGGGAAACATTGCTGCGCCGTCACCGGCGTCTTCGATGCTCTTTACAGTCGGCCTGGTCAGCTCCTGGTACTCCTCCAACATCGGCGTACTGCTGC TGAACAAATACTTGCTCAGTAGTTACGGGTTCAAGTACCCGATCTTCCTCACCATGTGCCACATGACGGCTTGCAGTCTCCTCAGCTACATCGCCATTGC CTGGATGAGGATTGTGCCAATGCAGACTATTCGATCCCGCACCCAATTCTTTAAGATCTCCGCCTTGAGCCTCATTTTCTGCGTGTCGGTGGTGTTCGGC AACATCTCTCTCCGCTTCCTTCCTGTCTCGTTTAATCAGGCTATTGGTGCTACAACCCCTTTCTTCACCGCTGTCTTTGCTTATGTCATGACTCTCAAGA GAGAGGCTTGGCTCACTTACCTCGCCTTGGTTCCCGTCGTTACTGGAGTCATCATTGCCAGTGGGGGTGAACCAAGCTTCCATCTTTTTGGTTTCCTTAT GTGTATAGCTGCTACTGCGGCTAGAGCTCTCAAGTCAGTCCTCCAGGGTATATTGCTTTCTTCTGAGGGGGAGAAGCTGCATTCCATGAATCTACTTCTT TACATGGCTCCAATTTCTGTTGTGTTTTTACTGCCTACTACGCTCATAATGGAAAGGAATGTGGTTGGCATTACACTGGCTCTCGCTAGAGATGACAGCA AGATCATCTGGTTGCTGCTGTTCAACTCAGTATTAGCTTTTTTTGTTAATTGGACCAACTTTTTGGTCACCAAGCACACAAGTGCTCTCACTCTCCAGGT ATTGGGGAATGCCAAAGGTGCTGTAGCGGTGGTGGTGTCGATTCTCATATTCCAAAATCCAGTATCTGTGACAGGAATGCTTGGCTACTCCCTGACAGTG CTTGGAGTCGTCCTCTACAGCGAAGCGAAGAAAAGAAGCAAGTGA
AA sequence Show only first row Show all	>Lus10009878 pacid=23180144 polypeptide=Lus10009878 locus=Lus10009878.g ID=Lus10009878.BGIv1.0 annot-version=v1.0 MKGNIAAPSPASSMLFTVGLVSSWYSSNIGVLLLNKYLLSSYGFKYPIFLTMCHMTACSLLSYIAIAWMRIVPMQTIRSRTQFFKISALSLIFCVSVVFG NISLRFLPVSFNQAIGATTPFFTAVFAYVMTLKREAWLTYLALVPVVTGVIIASGGEPSFHLFGFLMCIAATAARALKSVLQGILLSSEGEKLHSMNLLL YMAPISVVFLLPTTLIMERNVVGITLALARDDSKIIWLLLFNSVLAFFVNWTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFQNPVSVTGMLGYSLTV LGVVLYSEAKKRSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	0	1
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	1.0	0.9063
AT2G19580		TET2	tetraspanin2 (.1)		Lus10007998 [exp]	1.7	0.8364
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	4.9	0.8075
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	6.7	0.7978
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	7.5	0.8402
AT5G59900			Pentatricopeptide repeat (PPR)...		Lus10010410 [exp]	9.5	0.7327
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040886 [exp]	13.0	0.7984
AT4G39840			unknown protein		Lus10041688 [exp]	15.7	0.8318
AT3G49720			unknown protein		Lus10011564 [exp]	15.7	0.7933
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	16.4	0.7804

Compare expression of checked genes

Lus10009878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.