Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11280 236 / 2e-77 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G05790 228 / 7e-74 MYB Duplicated homeodomain-like superfamily protein (.1) AT2G38090 207 / 2e-65 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G58900 204 / 1e-64 MYB Homeodomain-like transcriptional regulator (.1) AT5G01200 191 / 1e-59 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 162 / 5e-48 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 155 / 4e-45 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 143 / 1e-41 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 142 / 5e-40 MYB Homeodomain-like transcriptional regulator (.1) AT3G10580 125 / 3e-34 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014837 [exp] 439 / 5e-157 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 261 / 7e-87 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2) Lus10018209 [exp] 218 / 2e-69 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10040696 [exp] 217 / 4e-69 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10035518 [exp] 212 / 2e-67 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10027781 [exp] 169 / 4e-51 AT2G38090 208 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 163 / 2e-48 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 163 / 3e-48 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10040225 [exp] 156 / 2e-47 AT3G11280 144 / 3e-43 Duplicated homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G193000 [exp] 264 / 8e-88 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1) Potri.008G064200 [exp] 263 / 2e-87 AT5G05790 267 / 3e-89 Duplicated homeodomain-like superfamily protein (.1) Potri.016G112300 [exp] 220 / 1e-70 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 219 / 3e-70 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 217 / 2e-69 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.009G042600 [exp] 213 / 1e-67 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.005G087700 [exp] 162 / 3e-48 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 161 / 9e-48 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 159 / 6e-47 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.001G219100 [exp] 153 / 1e-45 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10009884 pacid=23180206 polypeptide=Lus10009884 locus=Lus10009884.g ID=Lus10009884.BGIv1.0 annot-version=v1.0 ATGGGAGCGGCTGTGTACCAGCATTTCTACATGCCGCAAAACGACGACGTGGCGTCGGAGTACTGGACCAAGGAAGAGAACAAGGCGTTCGAGAGCGCTT TGGCTATATACGGTGACGAGCACGATCCTGACCGTTGGTTTAAGGTGGCCGCCATGATCCCGGGGAAATCGGTTTCCGATGTTATCAAACAGTACAGAGA ATTGGAGGAAGACGTCGGGGATATCGAAGCTGGGAGGGTTGCTTTACCGGGTTACTTTCCCGGCGGCGGCGATGAAGACGATTGCTCTTCTTTCACGCTG GAGCTCATCGATTCCTTTAGAAAACGGCCACTGGGGTCCACCAAGACCTCCGATCAAGGCCGCAAAAAGGGCGTGCCTTGGACCGAAGACGAACACAGGA GGTTCTTGAAGGGGCTAATGAAGTACGGGAAAGGGGATTGGAGGAACATATCACGTAATTTCGTGGTATCGAAGACCCCAACGCAAGTAGCCAGTCACGC CCAAAAGTATTTCATCAGGCAGCAGCTCTCCGGCGTTAAGGACAAGAGGAGGCCAAGTATCCATGACATCACCACCGTCAATCTCTCCTCCCTAGACTCA TCATCAGCCGCCGCAGCGAACTCGACTACCCTCGAGCTCTCCGGCCTCTTTTCCTCACCGGCGGTGTCTAAATATAATCAAAACAAGGCGAGCTGGAACG TCCACCAGCATACTACAGCTAGTAGTCCATCATCAAACAGCTTGTTCATGGTGGCCTCGTCATCACCTTATATCAATTATTATGATCATATGGCATCATC ACTTCATCATCAGGGTCACCAGAAGAATCTCTACTCCGCCGCCTTTCAGACTTCCAATGCCAGACGAATCCGAGGGTGA
AA sequence Show only first row Show all	>Lus10009884 pacid=23180206 polypeptide=Lus10009884 locus=Lus10009884.g ID=Lus10009884.BGIv1.0 annot-version=v1.0 MGAAVYQHFYMPQNDDVASEYWTKEENKAFESALAIYGDEHDPDRWFKVAAMIPGKSVSDVIKQYRELEEDVGDIEAGRVALPGYFPGGGDEDDCSSFTL ELIDSFRKRPLGSTKTSDQGRKKGVPWTEDEHRRFLKGLMKYGKGDWRNISRNFVVSKTPTQVASHAQKYFIRQQLSGVKDKRRPSIHDITTVNLSSLDS SSAAAANSTTLELSGLFSSPAVSKYNQNKASWNVHQHTTASSPSSNSLFMVASSSPYINYYDHMASSLHHQGHQKNLYSAAFQTSNARRIRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10009884 [exp]	0	1
AT5G66440			unknown protein		Lus10042306 [exp]	3.2	0.9122
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10032118 [exp]	3.5	0.9071
					Lus10033847 [exp]	5.1	0.9146
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	6.6	0.8887
AT3G16330			unknown protein		Lus10038274 [exp]	8.1	0.9097
AT5G44670			Domain of unknown function (DU...		Lus10038387 [exp]	11.0	0.8986
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015287 [exp]	11.0	0.8861
AT3G27470			Protein of unknown function (D...		Lus10032090 [exp]	13.2	0.8971
					Lus10018997 [exp]	13.9	0.8979
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036709 [exp]	14.8	0.8890

Compare expression of checked genes

Lus10009884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.