Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06890 408 / 3e-143 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G30460 403 / 3e-141 Nucleotide/sugar transporter family protein (.1.2) AT2G28315 304 / 1e-102 Nucleotide/sugar transporter family protein (.1) AT4G09810 137 / 1e-37 Nucleotide-sugar transporter family protein (.1) AT4G39390 130 / 5e-35 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT1G34020 128 / 2e-34 Nucleotide-sugar transporter family protein (.1) AT1G21070 126 / 1e-33 Nucleotide-sugar transporter family protein (.1) AT1G76670 122 / 5e-32 Nucleotide-sugar transporter family protein (.1) AT5G42420 120 / 2e-31 Nucleotide-sugar transporter family protein (.1.2) AT5G55950 82 / 2e-17 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008596 [exp] 383 / 6e-133 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10041315 [exp] 277 / 8e-92 AT2G28315 528 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10021464 [exp] 276 / 1e-91 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10037397 [exp] 278 / 4e-91 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10024194 [exp] 227 / 2e-74 AT1G06890 238 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10041314 [exp] 214 / 4e-68 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10042217 [exp] 178 / 5e-53 AT1G06890 201 / 1e-61 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10033531 [exp] 140 / 4e-39 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10005790 [exp] 120 / 3e-31 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154800 [exp] 416 / 2e-146 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.019G128900 [exp] 408 / 2e-143 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.004G211900 [exp] 297 / 2e-99 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 286 / 1e-95 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.005G196500 [exp] 142 / 8e-40 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 136 / 2e-37 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 134 / 1e-36 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.007G077900 [exp] 128 / 2e-34 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.005G260300 [exp] 125 / 2e-33 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G000500 [exp] 119 / 4e-31 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10009918 pacid=23150129 polypeptide=Lus10009918 locus=Lus10009918.g ID=Lus10009918.BGIv1.0 annot-version=v1.0 ATGAGTGAGGGCCAGAAGTTCCAGTTGGGGACGGTGGGTGCTTTGAGCTTGTCGGTAGTATCGTCTGTCTCCATTGTGATATGCAATAAGGCGCTTATCA GCACTCTTGGTTTTACTTTTGCCACGACATTGACAAGCTGGCATCTTTTGGTCACATTTTGTTCCCTTCATGTGGCGTTGATGATGAAGTTGTTTGAACA CAAGCCTTTTGATGCAAGGGCAGTAATGGGATTTGGCATATTAAATGGGATTTCCATTGGGCTTCTAAATCTGAGCCTGGGTTTCAATTCTGTTGGTTTC TACCAGATGACAAAACTAGCAATCATCCCATGCACTGTCCTTTTGGAGACGCTGTTCTTCAGGAAGCTTTTCAGTCGAAATATCCAGTTTTCACTGGTGA TCCTCCTTCTGGGTGTTGGAATTGCAACTGTAACCGATCTTCAGCTGAATGTCTTGGGCTCCGTCTTATCTTTGCTTGCAGTTCTCACTACATGCATTGC CCAGATTGCACTGACTTTGTTCATCGTTGGCCCATTTCTAGATGGACTTCTGACCAACCTAAATGTGTTTGCGTTCAAGTACACCCCTCAAGTCCTGTTC TTCATTGTCCTTTCCTGCATGATATCGGTATCTGTAAACTTCAGTACATTTCTGGTAATAGGAAAGACATCTCCAGTTACCTATCAGGTGCTAGGACACT TGAAAACGTGCCTAGTCTTGGCCTTTGGCTATGTTCTGCTCCGTGACCCATTTAGCTGGAGGAACATTTTAGGTATCCTCGTTGCTATAGTGGGGATGGT ACTGTATTCCTACTTTTGCACGTTAGATACCCAGCAGAAGGCTCAAGAACCATCTACGAAACAACCCGAGGTAAATTTGCACGATTTATTGCGCCTGGAT TTGAATGCGAGAAGGAAGGGTGAGGAAGAAGGGGGGGGGGGGGGGGGGGCTTAG
AA sequence Show only first row Show all	>Lus10009918 pacid=23150129 polypeptide=Lus10009918 locus=Lus10009918.g ID=Lus10009918.BGIv1.0 annot-version=v1.0 MSEGQKFQLGTVGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVALMMKLFEHKPFDARAVMGFGILNGISIGLLNLSLGFNSVGF YQMTKLAIIPCTVLLETLFFRKLFSRNIQFSLVILLLGVGIATVTDLQLNVLGSVLSLLAVLTTCIAQIALTLFIVGPFLDGLLTNLNVFAFKYTPQVLF FIVLSCMISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLRDPFSWRNILGILVAIVGMVLYSYFCTLDTQQKAQEPSTKQPEVNLHDLLRLD LNARRKGEEEGGGGGGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10009918 [exp]	0	1
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	3.2	0.8478
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10032320 [exp]	6.4	0.8504
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029462 [exp]	11.5	0.8381
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	18.7	0.8404
AT5G08500			Transmembrane CLPTM1 family pr...		Lus10016422 [exp]	22.2	0.8221
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	24.5	0.8376
AT4G20720			dentin sialophosphoprotein-rel...		Lus10031541 [exp]	25.3	0.8263
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10003235 [exp]	36.7	0.8124
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	45.1	0.8305
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	49.4	0.8146

Compare expression of checked genes

Lus10009918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.