Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01060 282 / 3e-85 MYB LHY, LHY1 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) AT2G46830 168 / 3e-44 MYB AtCCA1, CCA1 circadian clock associated 1 (.1.2) AT5G37260 124 / 2e-31 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1) AT1G18330 120 / 1e-29 MYB RVE7, EPR1 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) AT5G17300 121 / 2e-29 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT3G10113 119 / 2e-29 MYB Homeodomain-like superfamily protein (.1) AT3G09600 100 / 3e-23 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G52660 101 / 4e-23 MYB Homeodomain-like superfamily protein (.1.2) AT5G02840 96 / 2e-21 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT4G01280 96 / 2e-21 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012602 [exp] 986 / 0 AT1G01060 341 / 7e-108 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10005134 [exp] 507 / 2e-170 AT1G01060 377 / 5e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10030184 [exp] 324 / 8e-104 AT1G01060 247 / 2e-75 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10030183 [exp] 206 / 3e-60 AT1G01060 144 / 2e-38 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Lus10031322 [exp] 124 / 4e-30 AT1G18330 199 / 4e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10031893 [exp] 123 / 8e-30 AT3G10113 207 / 2e-63 Homeodomain-like superfamily protein (.1) Lus10042292 [exp] 120 / 6e-29 AT1G18330 198 / 5e-60 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10026365 [exp] 119 / 1e-28 AT1G18330 193 / 6e-58 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 102 / 2e-23 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180800 [exp] 501 / 5e-168 AT1G01060 369 / 1e-117 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.014G106800 [exp] 491 / 4e-164 AT1G01060 378 / 3e-121 LATE ELONGATED HYPOCOTYL 1, LATE ELONGATED HYPOCOTYL, Homeodomain-like superfamily protein (.1.2.3.4.5) Potri.004G074300 [exp] 123 / 2e-29 AT5G17300 218 / 5e-66 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.017G144800 [exp] 121 / 4e-29 AT5G17300 200 / 2e-59 REVEILLE 1, Homeodomain-like superfamily protein (.1) Potri.012G038300 [exp] 118 / 5e-28 AT1G18330 158 / 5e-44 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.015G030400 [exp] 117 / 1e-27 AT1G18330 170 / 1e-48 REVEILLE 7, EARLY-PHYTOCHROME-RESPONSIVE1, Homeodomain-like superfamily protein (.1.2) Potri.006G133000 [exp] 102 / 2e-23 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 100 / 6e-23 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 100 / 2e-22 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 100 / 2e-22 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10010100 pacid=23158846 polypeptide=Lus10010100 locus=Lus10010100.g ID=Lus10010100.BGIv1.0 annot-version=v1.0 ATGGACACAAACTCTTCTGGGGAAGAGTTGTTTATCAAGACAAGAAAACCTTATACAATTACCAAGCAGCGGGAGCGATGGACGGTGGAAGAGCATAATA GGTTCCTGGAGGCTCTGAAGCTCTATGGTCGAGCTTGGCAGCGAATAGAAGAACATATTGGGACAAAGACTGCCGTGCAGATTAGAAGCCATGCACAAAA GTTCTTCACAAAGTTGGAGAAGGAAGCTGTAGCAAAAGGCGTTCCAATAGGACAGGCTCTTGATATTGATATTCCACCTCCACGTCCTAAAAGGAAGCCA AGTAATCCTTACCCTCGTAAAACAGGTGTTAGTTCTATCACATCAAAAGATGGCAAGGTTTCGGTATCACTCCCTGTTCCTCGCAACCAGCAAGTGTTAG ACTTGGAGACAGAACCACCTCCTGAGAAATCAAGCGTCGATGAGAAGTCAACTGGAGCCAAAGGAATCCATGATGACAGTTGCTCACAAGTATTTACCAG CAGTTCCTCTGTCTATTCACTGAAGAAATATCCCACTCCACAACAGCAAGGCCCAACGAGTCCAGGCTCCTTTAGGGAGTTTGTACCACGGTTGAAAGAT GTGGTAAGTCAGGATGCACCTAATGAATTGCATTTCACAACTGAATTTGATGAAAATACATTGCAGTTGGACAACTCCTACCATTTGCACGATAACATAC AACAAGGCAAAAAGGCTGATGATCATACCAACATCCTGCCAGGGGATAAGATGCAGTCAATGCAGAACTTTCCAGAGCATATTCCTGTGAAAATTCTAGA TAGGAAAACATGTACGCAAAATTCACCGCCAGATGTTCTTCGTCATAAATCGATGGTCCCTGGAGGAGAAAGTCAAGCACAATCTACTGTTTACTCGCTT CTGACTACATCTGCAGCTGAAATTCAGAACAATTTCCCCGCATCTTCGCACCAATCATTTCCACCATTGGTCCGTAGTCAAGATGAGTACAAATCCTTCC TTCAGATGTCATCAACCTTTTCGAGTCTTGTTGTATCTACTCTGCTACAGAATCCTGCTGCTCATGCAGCAGCAAGCTTTGCTGCGTCCTTTTGGCCCTT TGCAAATGTTGGAAATGCTGCAGATTCTACAGCATGCACGAAAGAAGGGTTTTCGTCAAGGGAGATAAACTCTGCTCCTAGTATGGCAGCCATTGCTACA GCTACTGTGGCAGCAGCAACTGCATGGTGGGCTGCTCATGGACTGCTTCCCATGTGCGCCCCTCTGCAAACTGCCTTTCCCTGCCCTCCAGCCACTACAG TACCACGTGATGCCAGAATGGCAAGTAAGGAAGTTAATCTTGAAGATCCTCCTTTAAATCATGAATGGACGGAGCCTGAACATTTGGAGGCAGCTCAAGT TCAGAACTCATCCTCGAAGTTGTCTGACAAGTATTCACCCGAATGTGAAGAGAATGGAGGCTTAAAGCCAAATTCTACACCAAAAGTTACAGACCAGGAA ACAAATGCTACACCACCTGAGGTACATGATTGTAACAAATCAAAGAACAGGAAGCAGGTTGATCGGTCTTCATGCGGTTCAAATACAGCTTCCAGTAGTG AAGTGGAGACAGATGCACTAGAGAAGAATGAGAAAGACGAGGAAAAAACCAAAGAAGCTGAAACAAATCCTCTAGCACCGGCAGATAGTCGTCGAAGTAG AAGCAATAATGGAAGCACAAGCGACTCATGGAAGTCGGTCTCCGAAGAGGGACGTCTTGCTTTCCGAGCATTATTCTCTAGAGAAGTGCTTCCACAGAGC TTCTCACCCCCTCCCAAAGGAGAGGGTGAGAATGGGCACCATGAGGAGGATAATGATGAAGTGCAGATGCCATATGTGGACCGTAGAAATGGAGATTCAG AGGTATTAGATCTGAACAGCAGCAAGACATGGTGCCAAGAAGGAGCAGAGAAGAATCCATATTTACCATCATGTTTTTCAGCAGTTGGAGTCGGAAATGG AAAGCTGAAAGGCCGCCGAACTGGGTTCAAACCCTACAAAAGATGTTCCGTGGAGGCCAAGGAAAACAGGTCCTGCAGCTGTCAAGGGGAGGAGAAGGAG TCGAAGCGTATATGCTTGGGGCTGGAACCGGAAGCTTCGACCTGA
AA sequence Show only first row Show all	>Lus10010100 pacid=23158846 polypeptide=Lus10010100 locus=Lus10010100.g ID=Lus10010100.BGIv1.0 annot-version=v1.0 MDTNSSGEELFIKTRKPYTITKQRERWTVEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEAVAKGVPIGQALDIDIPPPRPKRKP SNPYPRKTGVSSITSKDGKVSVSLPVPRNQQVLDLETEPPPEKSSVDEKSTGAKGIHDDSCSQVFTSSSSVYSLKKYPTPQQQGPTSPGSFREFVPRLKD VVSQDAPNELHFTTEFDENTLQLDNSYHLHDNIQQGKKADDHTNILPGDKMQSMQNFPEHIPVKILDRKTCTQNSPPDVLRHKSMVPGGESQAQSTVYSL LTTSAAEIQNNFPASSHQSFPPLVRSQDEYKSFLQMSSTFSSLVVSTLLQNPAAHAAASFAASFWPFANVGNAADSTACTKEGFSSREINSAPSMAAIAT ATVAAATAWWAAHGLLPMCAPLQTAFPCPPATTVPRDARMASKEVNLEDPPLNHEWTEPEHLEAAQVQNSSSKLSDKYSPECEENGGLKPNSTPKVTDQE TNATPPEVHDCNKSKNRKQVDRSSCGSNTASSSEVETDALEKNEKDEEKTKEAETNPLAPADSRRSRSNNGSTSDSWKSVSEEGRLAFRALFSREVLPQS FSPPPKGEGENGHHEEDNDEVQMPYVDRRNGDSEVLDLNSSKTWCQEGAEKNPYLPSCFSAVGVGNGKLKGRRTGFKPYKRCSVEAKENRSCSCQGEEKE SKRICLGLEPEAST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10010100 [exp]	0	1
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10012602 [exp]	1.0	0.9816
AT3G12320			unknown protein		Lus10008671 [exp]	2.4	0.8985
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10015619 [exp]	3.0	0.8383
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10014015 [exp]	3.5	0.8811
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Lus10019093 [exp]	4.0	0.8786
AT5G06980			unknown protein		Lus10026150 [exp]	5.7	0.8520
AT5G64170			dentin sialophosphoprotein-rel...		Lus10015846 [exp]	5.9	0.8631
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10024276 [exp]	5.9	0.8753
AT2G46790		TL1, APRR9	TOC1-LIKE PROTEIN 1, Arabidops...		Lus10015571 [exp]	6.0	0.8691
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	6.3	0.8262

Compare expression of checked genes

Lus10010100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.