Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19740 1081 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 1035 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G02890 461 / 6e-144 AAA-type ATPase family protein (.1.2) AT4G02480 450 / 1e-139 AAA-type ATPase family protein (.1) AT4G24860 365 / 2e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G62130 362 / 7e-109 AAA-type ATPase family protein (.1) AT1G64110 350 / 3e-106 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G52882 340 / 9e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 326 / 2e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 245 / 2e-72 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017405 [exp] 1726 / 0 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 1088 / 0 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040976 [exp] 523 / 4e-174 AT3G19740 472 / 2e-154 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010282 [exp] 408 / 3e-124 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10036347 [exp] 406 / 2e-123 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10017535 [exp] 351 / 1e-106 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10028752 [exp] 350 / 3e-106 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10024692 [exp] 347 / 6e-105 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10039309 [exp] 336 / 6e-101 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093300 [exp] 1125 / 0 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G069800 [exp] 1088 / 0 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G096300 [exp] 475 / 8e-149 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.014G131000 [exp] 470 / 2e-147 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.002G205900 [exp] 466 / 1e-145 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G094100 [exp] 460 / 2e-143 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.003G133700 [exp] 357 / 9e-109 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G026900 [exp] 355 / 4e-108 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G035400 [exp] 352 / 7e-107 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G097600 [exp] 349 / 6e-106 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10010204 pacid=23154244 polypeptide=Lus10010204 locus=Lus10010204.g ID=Lus10010204.BGIv1.0 annot-version=v1.0 ATGTATGCAAGGATGATAAAGAATTGTAGTAATCTCAAATGGGGTTCAGTGTTGATGCCATCCATCCAGCTGATTAGGCCTAATACATTGCATCAGGCCC GTGTTCGATCTCGCTTTCATAGAGCTAATTCGGTTCGAGTCTCGAATTCCCGTGGCAGTTTGATAAGGACGTGTCGGTTTAATTCATTCAGCACTAGTAC CTCAGGATGTAGGTATGTTAGTAGTCCAACCAAAGGGTCTCAGTTTCGTGCCTATAGTTCGGAAGGAGATGGACGTAGTAGTAGTAGTAACACAAGTGAG GATAAATGTGATCCTCTGAATGGAATCTCGAAAGTTGGTGATGGGAAGGTAGGGAATGGGAAAGTAGGAGGTGGTGAGTCAAGATATTGTAATACACACG CGAGTCTAGCAGAACAGGATCAAAGGGAATGGCTTGATAATGAGAAGCTGGCTGTGGAAGCTAAGAAGAAAGAGTCGCCCTTTTTAACTAGACGGGAGCG CTTTAGAAATGACTTCTTGCGGAGAGTCGTTCCGTGGGAGAAAATCCAGGTTTCGTGGGAATCTTTCCCATACCACATCAAGGAAAATACAAAAAACGTT TTGCTGGAATGTGTGGCATCCCACTTAAAGAGTAAGAATTTCGCTACTTCGTATGGTTCTCGCTTGACGTCTTCCAGTGGGAGAATACTGCTTCAGAGCT CTCCAGGCACGGAACTTTACCGGGAAAGAATAGTGAGAGCACTTGCGCTGAAGTTGCAAGTTCCATTGCTGGTTCTTGATAGTAGTGCTCTTGCTCCTTA TTATCTTGATGACTTGACATCCGAGGCTGAGTCAGATACAGAATCGGTGGACGAGGGTACATCAGAGTCCGAGGTTGATGAAGAGAATGAAGGAGCGAAT GCCGAGGAAGGTAGTAGTGAGGATGAAGTTGTTGATTTATCGGCCATTGATGAGGCTGCCATCCGGAAGCTCATTCCATTCGATATCGAAGAGTTTGAAA AGCAAGTCTCTGGAGAATCAGAAGCATCAAAGTCTGATACTGCTGACCCTTCTGATAACTCCAAAAGGCCTCTCAAGAAAGGTGATCGGGTGAAGTACAT TGGCAGTTCAAATTCCGTTGAAGCTGATAACAGGCCCTTATCCAATGGTCAACGTGGTGAGGTATACGAGATCAATGGAGTTCAAGCTGCTGTTGTTTGG GAAATGGCTAATGATAGCCAAACAAAAGAAGGAGACGCGCAAAAGGAACACGAAGAGTCGTCTGGAAAATCCCACGTATTTTGGATAAATGTTAAGGAGA TTGAGCACGATCCTGATGCCGAGGCCGAAGACTGTTGTATCGCAATGGATGCTTTATATGAGATCTTGCAAACCAAGCAGCCGCTCGTAGTATATTTCCC AGACTTTTTCGTTTGGTTGTCTAGGGCAGTGCCGAAGTCGAACCGTAAGGAGTTTGTCCACAAGCTGCTGGAAATGCTTGACCAGCTTTCTGGTTCTGTT GTCTTGATTTGTGGTCATAATAACAAAGTCCAATCCGGGTCAAAGGAGAAGGAGAAATTCACAATGATCCTTCCGAATTTTGCTCGACTGGCTAAGCTGC CTCTTCCTTTAAAGAATCTTACTGAAGGTCTTAGAGGGACGAAAAAATCTACTTCCATCGAATTCCATAAGCTCTTTCCGAATGTCTTGCGCCTTGACCC TCCCAAGGAAGAAGATCTCCTTATAACATTTAATAAACAGATTGAAGAGGATAAGAAAATAGTGATATCAAGGAGCAATTTATATGAACTGCATAAGGTT CTCGATGAAAACGAGATGTTTTGTGCAGACTTGCTGGATGTAGATACTGATGGTTTAGTTCTGACCAAGCAGAAAGCGGAAAAAATCGTCGGCTGGGCTA AGAACCACCATTTGTCCTCCTGTGCACACCCATCAATAGAAAAGGAGAGATTGGTTTTGCCTCGCGAAAGCCTTGAGGTTGCTATCTTAAGGGGGAAAGA TTATGAGATCTCAATGAGGAAACCGTCTCAAGATTTGAAGAACATGGCAAAGGATGAATTCGAGAGCAATTTCGTGTCGGCTGTGGTCCCTCCAGGAGAG ATTGGTGTCAAATTCGATGACATAGGAGCTCTTGAGGATGTGAAGAAAGCCTTGAACGAAGTCGTCATTCTTCCTATGAGAAGACCTGAACTTTTTACTC ATGGAAATTTGTTGAGGCCATGCAAAGGAATATTGCTATTCGGTCCTCCTGGAACTGGGAAGACTCTCCTTGCAAAAGCACTTGCCACTGAAGCAGGTGC AAACTTTATCAGCATAACAGGTTCAAATCTTACATCTAAGTGGTTTGGAGATGCTGAGAAGTTGACAAAGGCACTTTTCTCCTTTGCCAGCAAGCTTGCT CCTGTTATCATATTTATCGACGAGGTAGATAGTCTGCTAGGTGCTCGAGGGGGGTCTCATGAGCACGAGGCTACAAGAAGGATGAGAAACGAGTTCATGG CAGCATGGGATGGATTAAGATCGAAAGACACTCAAAGGATCGTCATCCTTGGTGCCACAAATCGACCTTTTGATCTTGATGATGCTGTGATTCGTCGTTT GCCTAGGAGAATATACGTGGACTTGCCTGATGCTGCAAATCGTTTGAGGATTCTGAAAGTTATTCTCGGGAACGAGAACTTACATTCGGAATTCCAGTTT GAAGAACTTGCTAATGCAACCGATGGATATTCTGGCAGCGACTTGAAGAACCTTTGTATTGCTGCAGCATATAGGCCAGTGCAAGAAGTCATAGAAAAGG AAAGCAAGGAAAAGAAGGATGATTATGTTGAAGGTTCGTCGTTAAGACCGCTCACCTTGGATGATTTCATCGAGGCAAAGGCTAAGGTCGGTCCATCAGT TTCGCACGATGCAGCGAGCATGAACGAGTTGCGGAAATGGAACGAACAATACGGAGAAGGAGGCAGCCGGCAGAAGTCGAGATTTGGGTTTTGA
AA sequence Show only first row Show all	>Lus10010204 pacid=23154244 polypeptide=Lus10010204 locus=Lus10010204.g ID=Lus10010204.BGIv1.0 annot-version=v1.0 MYARMIKNCSNLKWGSVLMPSIQLIRPNTLHQARVRSRFHRANSVRVSNSRGSLIRTCRFNSFSTSTSGCRYVSSPTKGSQFRAYSSEGDGRSSSSNTSE DKCDPLNGISKVGDGKVGNGKVGGGESRYCNTHASLAEQDQREWLDNEKLAVEAKKKESPFLTRRERFRNDFLRRVVPWEKIQVSWESFPYHIKENTKNV LLECVASHLKSKNFATSYGSRLTSSSGRILLQSSPGTELYRERIVRALALKLQVPLLVLDSSALAPYYLDDLTSEAESDTESVDEGTSESEVDEENEGAN AEEGSSEDEVVDLSAIDEAAIRKLIPFDIEEFEKQVSGESEASKSDTADPSDNSKRPLKKGDRVKYIGSSNSVEADNRPLSNGQRGEVYEINGVQAAVVW EMANDSQTKEGDAQKEHEESSGKSHVFWINVKEIEHDPDAEAEDCCIAMDALYEILQTKQPLVVYFPDFFVWLSRAVPKSNRKEFVHKLLEMLDQLSGSV VLICGHNNKVQSGSKEKEKFTMILPNFARLAKLPLPLKNLTEGLRGTKKSTSIEFHKLFPNVLRLDPPKEEDLLITFNKQIEEDKKIVISRSNLYELHKV LDENEMFCADLLDVDTDGLVLTKQKAEKIVGWAKNHHLSSCAHPSIEKERLVLPRESLEVAILRGKDYEISMRKPSQDLKNMAKDEFESNFVSAVVPPGE IGVKFDDIGALEDVKKALNEVVILPMRRPELFTHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSNLTSKWFGDAEKLTKALFSFASKLA PVIIFIDEVDSLLGARGGSHEHEATRRMRNEFMAAWDGLRSKDTQRIVILGATNRPFDLDDAVIRRLPRRIYVDLPDAANRLRILKVILGNENLHSEFQF EELANATDGYSGSDLKNLCIAAAYRPVQEVIEKESKEKKDDYVEGSSLRPLTLDDFIEAKAKVGPSVSHDAASMNELRKWNEQYGEGGSRQKSRFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19740			P-loop containing nucleoside t...		Lus10010204 [exp]	0	1
AT3G19740			P-loop containing nucleoside t...		Lus10017405 [exp]	1.4	0.9300
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10012114 [exp]	1.7	0.9395
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Lus10010356 [exp]	5.2	0.9114
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10006812 [exp]	6.0	0.8908
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10028879 [exp]	7.4	0.8894
AT5G62170			unknown protein		Lus10027402 [exp]	8.5	0.8735
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10034315 [exp]	12.2	0.8710
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10018494 [exp]	12.6	0.8003
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10003036 [exp]	12.8	0.8440
AT3G21540			transducin family protein / WD...		Lus10012475 [exp]	13.2	0.8859

Compare expression of checked genes

Lus10010204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.